PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010187.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 738aa    MW: 80707.2 Da    PI: 6.1502
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010187.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1961116156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                r++ +++t+ q++e+e++F+++++p+ ++r+eL++ lgL+  qVk+WFqN+R+++k
  Rmu_sc0010187.1_g000002.1  61 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMK 116
                                789999***********************************************998 PP
2START218.91.7e-682534771206
                                HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGC CS
                      START   1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeq 71 
                                ela +a++el+++a+a++p+Wv           +++n+de+l++f+++ +      ++ea+r+s++v+m++++lve+l+d++ q
  Rmu_sc0010187.1_g000002.1 253 ELAVAAMEELIRMAQAGDPLWVPAHdnsssthhDILNEDEYLRTFPRGIGpkplgLKSEASRESALVIMNHVNLVEILMDVN-Q 335
                                57899*****************88888899*****************999********************************.* PP

                                T-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE CS
                      START  72 Wdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvR 144
                                W++ l     +a+tl+ +s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ +    + R
  Rmu_sc0010187.1_g000002.1 336 WSTVLCgivsRAMTLDILSTGvagnynGALQVMSAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDNLRPSS----ISR 415
                                ****999999****************************************************************965....8** PP

                                -EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                      START 145 aellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                ++++pSg+li++++ng+skv+wvehv++++r +h+++r+lv+sgla+gak+wvatl+rqce+
  Rmu_sc0010187.1_g000002.1 416 SRRRPSGCLIQELPNGYSKVVWVEHVEVDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 477
                                ************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    
MFQPSMFDSH HMSMLDMSTL KSSESDMGRS RDDDFETKSG TETTDAPSGD ELDPSQPRPK  60
RKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRDLGLE PLQVKFWFQN KRTQMKAQHE  120
RHENSILKNE NDKLRAENNR YKEALSNATC PNCGGPAALG EMSFDEQHLR IENARLREEI  180
DRISSIAAKY VGKPMSSSFS HLSSSQGPSR SLDLAVGSFG ASQSGYVGEM YGSGDLLRSV  240
SVPTDADKPL IVELAVAAME ELIRMAQAGD PLWVPAHDNS SSTHHDILNE DEYLRTFPRG  300
IGPKPLGLKS EASRESALVI MNHVNLVEIL MDVNQWSTVL CGIVSRAMTL DILSTGVAGN  360
YNGALQVMSA EFQVPSPLVP TRENYFVRYC KQHTDGTWAV VDVSLDNLRP SSISRSRRRP  420
SGCLIQELPN GYSKVVWVEH VEVDDRAVHN IYRPLVNSGL AFGAKRWVAT LDRQCERLAS  480
SLANNIPAGD LCVITSAEGR KSMLKLAQRM VLSFCTGVGA STAHAWTTLS ATGSDDVRVM  540
TRKSMDDPGR PPGIVLSAAT SFWLPVPPKR VFDFLRDENS RSEWDILSNG GLVQEMAHIA  600
NGRDPGNCVS LLRVNSANSS QSNMLILQES CTDSTGSYVI YAPVDIVAMN VVLSGGDPDY  660
VALLPSGFAI LPDGPPAGGA GGILDVGSGG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL  720
IKCTVERIRA AVTCDQNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein