PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010181.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 94aa    MW: 10041.5 Da    PI: 9.3178
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010181.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.2e-101171026
                               GGTS--TTTTT-SS-SS CS
                    zf-CCCH 10 artGtCkyGdrCkFaHg 26
                               ++tG+CkyG++C+F+H+
  Rmu_sc0010181.1_g000001.1  1 MKTGECKYGAQCRFHHP 17
                               89**************8 PP
2zf-CCCH41.91.6e-135073427
                               ---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                               ++C ++++tGtCkyG++C+F H+p
  Rmu_sc0010181.1_g000001.1 50 VICVYYLKTGTCKYGATCRFDHPP 73
                               68********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    
MKTGECKYGA QCRFHHPIDR PAVALSTTKP SQQENVKLTL AGLPRREGAV ICVYYLKTGT  60
CKYGATCRFD HPPPGEVVGM AASQAKSDST GGKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-36C3H family protein