PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0009897.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 426aa MW: 46218.3 Da PI: 9.5813

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0009897.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.9e-05	186	208	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg+ F+ ++L+ H++ H Rmu_sc0009897.1_g000007.1 186 ACPQCGEIFPKLESLELHQSIrH 208 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MALLTFQPEA TEPKKKKKQV QPQPPPPSKR SHQKHSSKKQ QPPPQKPPSS SWDHFKNLLT 60 CKQIEGSRVH DPSKNAIGYS KLGSSCGSIC SFRDVVHGNT TSRVVHRADN SPESSSLGQE 120 TGLLSRKVTI RSESGSGTRS NRGGGAAYTS SNSSRGMQFR KLSGCYECHY IVDPSRYPVP 180 RSTICACPQC GEIFPKLESL ELHQSIRHAV SELGVEDSGR NIVEIIFKSS WLKKDSPICR 240 IERILKVQNT QRTIQRFEDC RDAVKNRALN STRKNPRCAA DGNELLRFHC TSISCTLGAR 300 GSTNLCGSIP GCGVCTTIRH GFQGGGGLEV GKGVRTTASS GRAHDSLHCT DGRRAMLVCR 360 VIAGRVRRIA DDAAAEEEAA ATASAGGSYD SVAGYAGVYS NLEELVVFNP RAILPCFVVI 420 YKALDS

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MALLTFQPEA TEPKKKKKQV QPQPPPPSKR SHQKHSSKKQ QPPPQKPPSS SWDHFKNLLT  60
CKQIEGSRVH DPSKNAIGYS KLGSSCGSIC SFRDVVHGNT TSRVVHRADN SPESSSLGQE  120
TGLLSRKVTI RSESGSGTRS NRGGGAAYTS SNSSRGMQFR KLSGCYECHY IVDPSRYPVP  180
RSTICACPQC GEIFPKLESL ELHQSIRHAV SELGVEDSGR NIVEIIFKSS WLKKDSPICR  240
IERILKVQNT QRTIQRFEDC RDAVKNRALN STRKNPRCAA DGNELLRFHC TSISCTLGAR  300
GSTNLCGSIP GCGVCTTIRH GFQGGGGLEV GKGVRTTASS GRAHDSLHCT DGRRAMLVCR  360
VIAGRVRRIA DDAAAEEEAA ATASAGGSYD SVAGYAGVYS NLEELVVFNP RAILPCFVVI  420
YKALDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-159	C2H2 family protein