PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0009816.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 610aa MW: 67861.1 Da PI: 8.0858

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0009816.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	131	151	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C +G+rC++ H+ Rmu_sc0009816.1_g000006.1 131 ICTFYQK-GACAFGSRCRYEHV 151 7****.*********997 PP
2	zf-CCCH	19	2.5e-06	241	263	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg Rmu_sc0009816.1_g000006.1 241 RAICS-FAAAGNCPRGENCPHIHG 263 78999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MEVINPRKLE FASTIVGTKN ARERRFTLID EAKSVMKMVD AKVVDAPKED DTTIVYNSIN 60 LGFCIGRKRI TNGFLCSVWL VFGSLLKAVL TLLHVISDIY RVLCKFFAHG ACLKGEHCEF 120 SHDWKDPSNN ICTFYQKGAC AFGSRCRYEH VKASRAQSSG SSSSANSHQS LAFDSALAHP 180 SRTASSGVAL VPGTLSELSA FSSPFLPPPK PAWSDSLDDG DFDHNEDDNV GETRSARPAD 240 RAICSFAAAG NCPRGENCPH IHGDICPSCG KHCLHPYRPV EREEHMRTCE EKHKQLEALK 300 RSQEIECSVC LERVLSKPTV AERKFGILSE CDHPFCISCI RNWRSSSPTS GMDVNSALRA 360 CPICRKLSYF VIPSVIWYNT KEEKEEIVDS YKARLRSIDC KHFDFGNGNC PFGTSCFYKH 420 AYRDGRLEEV VLRHLGNEDG QTVIAANIRL SDFLSDLRIS PKIFQSRATP REGPPKPIRS 480 GLAQTQLPTP PDDEPTLQLQ CSAADPRRHG CSTMIFATTH QDATINTHEQ SRHNPHHPST 540 ELAPPILVPL HRCRPRSSKQ GSSILHRMAS HPGDFHSKSE AKLACKNSEP HPSKCPRMLV 600 SILIWQQTAA

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MEVINPRKLE FASTIVGTKN ARERRFTLID EAKSVMKMVD AKVVDAPKED DTTIVYNSIN  60
LGFCIGRKRI TNGFLCSVWL VFGSLLKAVL TLLHVISDIY RVLCKFFAHG ACLKGEHCEF  120
SHDWKDPSNN ICTFYQKGAC AFGSRCRYEH VKASRAQSSG SSSSANSHQS LAFDSALAHP  180
SRTASSGVAL VPGTLSELSA FSSPFLPPPK PAWSDSLDDG DFDHNEDDNV GETRSARPAD  240
RAICSFAAAG NCPRGENCPH IHGDICPSCG KHCLHPYRPV EREEHMRTCE EKHKQLEALK  300
RSQEIECSVC LERVLSKPTV AERKFGILSE CDHPFCISCI RNWRSSSPTS GMDVNSALRA  360
CPICRKLSYF VIPSVIWYNT KEEKEEIVDS YKARLRSIDC KHFDFGNGNC PFGTSCFYKH  420
AYRDGRLEEV VLRHLGNEDG QTVIAANIRL SDFLSDLRIS PKIFQSRATP REGPPKPIRS  480
GLAQTQLPTP PDDEPTLQLQ CSAADPRRHG CSTMIFATTH QDATINTHEQ SRHNPHHPST  540
ELAPPILVPL HRCRPRSSKQ GSSILHRMAS HPGDFHSKSE AKLACKNSEP HPSKCPRMLV  600
SILIWQQTAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-124	C3H family protein