PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0009714.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25485.1 Da    PI: 8.1632
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0009714.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.41e-192062345
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               i   sn qvtfskR  g++KKA+EL++LC++e+ +i+fs+ +k
  Rmu_sc0009714.1_g000010.1 20 IPKRSNLQVTFSKRCSGLFKKASELCTLCGVEIVIIVFSPANK 62
                               667899**********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MAMKSKKPNQ GRQKIVIAKI PKRSNLQVTF SKRCSGLFKK ASELCTLCGV EIVIIVFSPA  60
NKPFSFGHPS VESLISRFLT PSHLSVSRST QHPQYCREVS VEHKLNMQLT QTQGHLEAEK  120
QRGEALDKLS EDSERSSHCW WENSIEELGL DELQTLKAAL EELKKNVTEE VHKMNDPCNS  180
SVPFFMMNGI QLDHHLSERK AVEINVSHGS MIPPSAYSFG YGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-55M-type_MADS family protein