PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0009691.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 289aa MW: 32000.7 Da PI: 5.1942

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0009691.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.8	4.7e-16	5	42	1	38
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFG 38 +CaaCk+lrr+C++dCv+apyfp+++p++f vh+++ Rmu_sc0009691.1_g000003.1 5 RCAACKYLRRRCPSDCVFAPYFPSNNPQRFDSVHRIYA 42 6***********************************96 PP
2	DUF260	41.3	4.4e-13	43	87	56	100
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +a+++l+yeAe r++dPvyG++++i++lqqq+ ++++ela++++e Rmu_sc0009691.1_g000003.1 43 QAAETLCYEAESRIHDPVYGCAAIIFQLQQQIYNTESELAKTRAE 87 6899************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MVNGRCAACK YLRRRCPSDC VFAPYFPSNN PQRFDSVHRI YAQAAETLCY EAESRIHDPV 60 YGCAAIIFQL QQQIYNTESE LAKTRAEIAV IRSNGKGKEP EVQPSTDQVH DGFRACPQST 120 MMRHLLPPEM ASLDVVQNMV NNEAMVVFPQ PVVPYSYAQA AAGTSNGLAA RSEPPFSTWT 180 AVSRWRGSGA GKVFAGRGAG SSTMGNRTLR INEEGNNQPR DMRAVNRNGS VIGLFDREID 240 QFQGANEEIN LDLDLAANHN SMLLDRNNSE GTEEDQFVEN ALKDPSYDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-38	LBD family protein