PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0009516.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YB

Protein Properties

Length: 444aa MW: 47672.3 Da PI: 9.668

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0009516.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.2	7.6e-56	299	392	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk Rmu_sc0009516.1_g000001.1 299 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK 382 59******************************************************************************** PP NF-YB 85 vylkkyrele 94 vyl+kyre + Rmu_sc0009516.1_g000001.1 383 VYLAKYREGD 392 *****966 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MVLSLTLARE VAGRRLGFAG GGSVLSPKKE VLSLSSGLFL GNGGRARRCL YLVGFDLIFF 60 AVFVACVRSN GGVVSKEAIW GHPHGSQQMV FVKATAGDWV ADWMINPGQR ALGMMAARAG 120 IGVCSACGED RWQNWGDNGF MVLCSSLELV RPESDPRATS GGGRAGVGLR RAVPGGEGRA 180 VSSLGVYPRW VDWDWYWDAI ISGDGFWRTA VKAFHNGECA VGVLRQLVFG GGGKVAFSLR 240 VCPRCRLLSP FFSSVRLALS PLSRAKSKSH RVSMAEGPAS PGGGGSHDSG GEHSPRSNVR 300 EQDRYLPIAN ISRIMKKALP ANGKIAKDAK ETVQECVSEF ISFITSEASD KCQREKRKTI 360 NGDDLLWAMA TLGFEDYIDP LKVYLAKYRE GDTKGSGKGG ESSSKKEVQP SSIAQISHQG 420 SFSQGASYSN SQTQQMMVPM QGSE

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MVLSLTLARE VAGRRLGFAG GGSVLSPKKE VLSLSSGLFL GNGGRARRCL YLVGFDLIFF  60
AVFVACVRSN GGVVSKEAIW GHPHGSQQMV FVKATAGDWV ADWMINPGQR ALGMMAARAG  120
IGVCSACGED RWQNWGDNGF MVLCSSLELV RPESDPRATS GGGRAGVGLR RAVPGGEGRA  180
VSSLGVYPRW VDWDWYWDAI ISGDGFWRTA VKAFHNGECA VGVLRQLVFG GGGKVAFSLR  240
VCPRCRLLSP FFSSVRLALS PLSRAKSKSH RVSMAEGPAS PGGGGSHDSG GEHSPRSNVR  300
EQDRYLPIAN ISRIMKKALP ANGKIAKDAK ETVQECVSEF ISFITSEASD KCQREKRKTI  360
NGDDLLWAMA TLGFEDYIDP LKVYLAKYRE GDTKGSGKGG ESSSKKEVQP SSIAQISHQG  420
SFSQGASYSN SQTQQMMVPM QGSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	4e-70	NF-YB family protein