PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0009451.1_g000002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 338aa    MW: 37941.3 Da    PI: 8.9171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0009451.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12159206355
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L   ++YIk+Lq
  Rmu_sc0009451.1_g000002.1 159 QDHIIAERKRREKLSQRFIALAAMVPGL-----KKTDKASVLGDSIKYIKQLQ 206
                                6799************************.....9******************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MEISSIRGLT ELGMEDPFFV NQWHMNSLDE LSMLPLSAAF GENLQQSHCH PILNPKSSTN  60
TSLSSIDRPM KQLKPNNWNP SNHQFASLPN LLSFVNSYNT NQVGVVKPKE ETAVRSKNIN  120
HFPSDILVSQ GSFGNQNSSL KASQGTHRIN TNTRLSQTQD HIIAERKRRE KLSQRFIALA  180
AMVPGLKKTD KASVLGDSIK YIKQLQEKVK TLEEQTRVKK MESVVSVKRS QLNIANDDNS  240
SSDDNTSSVS FEETLPEIEA RFCDNNVLIR VHCMKRKGVV EKTIAEVEKL QLKLINSSVM  300
TFGSSVLDVT IVAQMEVEFC LSVKDVVKNL RSAFDLFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRE
2166171RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-60bHLH family protein