PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0009130.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 216aa MW: 24823 Da PI: 6.3979 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.8 | 7e-22 | 84 | 139 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r++L+ lgL+ rqVk+WFqNrR+++k Rmu_sc0009130.1_g000001.1 84 KKRYHRHTAHQIQEMENLFKECPHPDDKQRQKLSLDLGLKPRQVKFWFQNRRTQMK 139 688999***********************************************998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence |
MSTMGGGNVV NSETLFSSPM QNPNFNFMPF QPFSSILPKE ETGLMTRGKE EMMESGSGSE 60 HAEEKYSGNE QETEEQLQQQ PPKKKRYHRH TAHQIQEMEN LFKECPHPDD KQRQKLSLDL 120 GLKPRQVKFW FQNRRTQMKA QQDRADNVML RAENDTLKNE NYRLQAALRN IICPNCGGAA 180 MIGDIALDEH QLHLENARLR EEVCNSIVAM AGNCIW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G46880.1 | 6e-57 | HD-ZIP family protein |