PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0009049.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 301aa    MW: 34651.3 Da    PI: 9.7693
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0009049.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.72.9e-2015107199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                ffkv +p +++++  l++p +f e + ++   s + +l++   s rsW+v++  rk++g++++++GW++F k+n +++gDf+vF
  Rmu_sc0009049.1_g000009.1  15 FFKVIIPGYSTQH--LRIPPPFSEFIRND--LSDEAILNSntCSERSWNVRV--RKTKGGVYFKDGWQGFLKDNSVEDGDFLVF 92 
                                8899977776665..9*******999655..44456655522667*******..****************************** PP

                                EE-SSSEE..EEEEE-S CS
                         B3  83 kldgrsefelvvkvfrk 99 
                                +++g++ f   v++f++
  Rmu_sc0009049.1_g000009.1  93 EYEGNMHF--IVQIFDN 107
                                ****9**9..****997 PP
2B344.92.1e-142223001698
                                EE--HHH.HTT..---..--SEEEEEE.TTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                         B3  16 lvlpkkfaeeh..ggkkeesktltled.esgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                 ++p +f +eh  gg+     ++++     g++W +vkl   ++ ++ +l+kGW+eF+ an++k+g ++vF+++  +e +lvv+
  Rmu_sc0009049.1_g000009.1 222 YSFPTSFYREHlsGGN----YEVVFLKiAGGKRWyQVKL--VRSLRTAYLSKGWSEFACANQIKVGNICVFEVV--EENKLVVH 297
                                589********76544....4566666366788846888..999999*************************65..56667999 PP

                                EE- CS
                         B3  96 vfr 98 
                                v++
  Rmu_sc0009049.1_g000009.1 298 VVQ 300
                                875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MVRPKNGIKE KRPSFFKVII PGYSTQHLRI PPPFSEFIRN DLSDEAILNS NTCSERSWNV  60
RVRKTKGGVY FKDGWQGFLK DNSVEDGDFL VFEYEGNMHF IVQIFDNSCC ERDSFPDIET  120
HTKSTFAECK KRHPGRPRKS DIGCSKRSLA LNSRKDNSDN IANKRLPGRP RKSHIRRYKR  180
PCQSNSGEDN SVPDDIVEES AKSFKSNYPH VTKAIKETFC VYSFPTSFYR EHLSGGNYEV  240
VFLKIAGGKR WYQVKLVRSL RTAYLSKGWS EFACANQIKV GNICVFEVVE ENKLVVHVVQ  300
Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-17B3 family protein