PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0009036.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 20827.4 Da PI: 6.8804 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.8e-09 | 15 | 44 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rgrW +eEd++l v+q+G g+W++ +++ Rmu_sc0009036.1_g000001.1 15 RGRWVPEEDKKLFAFVQQHGHGSWNSLPQK 44 89***********************99887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence |
MGKQSHTVAS PGIRRGRWVP EEDKKLFAFV QQHGHGSWNS LPQKAAKARF SRQSKPLISH 60 DQPPRFEPVP VPQCLDMNER AREILLLLKS ILAADSGAQL GGGIGSTAAH VGQEVASLGK 120 VDVESVLANC DQFEAPRTST SVLGFDEVFG ESGTNNDYGE LLEALLQHNH NSTGFEVKDA 180 WSLEQRVKAK C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01140.1 | 5e-12 | MYB family protein |