PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0009005.1_g000015.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 276aa    MW: 30924.9 Da    PI: 8.2537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0009005.1_g000015.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.6e-10381191597
                                -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                         B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                                   lp + ++++g++   +  + l+    g sW v+l+ + +++r++l+kGW++F +   +++  f+vF+++g+ s f   v++
  Rmu_sc0009005.1_g000015.1  38 GKELPEPAVTKYGINCMAD-SIFLQVpNCGTSWPVELKKTIRGSRIWLQKGWERFTDFYSIDQDYFIVFSYEGEhSYF--QVHI 118
                                4678999999998776554.7888875568*******99999999***************************986666..8887 PP

                                E CS
                         B3  97 f 97 
                                f
  Rmu_sc0009005.1_g000015.1 119 F 119
                                7 PP
2B348.12.2e-15183274598
                                -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                                ++++ +l+s +l++p +f+ eh  ++   ++ t+tl+++  r+W+v++ ++k+++   + ++ W++Fvk n+L++gD ++F+l+
  Rmu_sc0009005.1_g000015.1 183 TMTEKYLSS-LLRVPSDFTIEHlcEIG--SHSTVTLQTSGERTWTVQCAVSKCGKNaRFNRASWRGFVKGNQLEAGDDCLFELI 263
                                445555555.59**********77433..5569***************88777666456679*********************9 PP

                                SSSEE..EEEEE- CS
                         B3  86 grsefelvvkvfr 98 
                                g+  + l+v + r
  Rmu_sc0009005.1_g000015.1 264 GE--RMLKVNISR 274
                                94..445777766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MSRPMASRSK REGRGHAFPV DSPSFCLKIV TAVDLQDGKE LPEPAVTKYG INCMADSIFL  60
QVPNCGTSWP VELKKTIRGS RIWLQKGWER FTDFYSIDQD YFIVFSYEGE HSYFQVHIFN  120
CSNMEIGYPI CGGAGGCMST PNSKGTSFPS ASSAGRDQNN DNQRDFYGAN NFKFGDKPSF  180
RVTMTEKYLS SLLRVPSDFT IEHLCEIGSH STVTLQTSGE RTWTVQCAVS KCGKNARFNR  240
ASWRGFVKGN QLEAGDDCLF ELIGERMLKV NISRAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-14B3 family protein