PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008982.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 442aa MW: 48638.5 Da PI: 8.183

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008982.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.1	3.8e-07	210	232	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Rmu_sc0008982.1_g000004.1 210 HYCQVCGKGFKRDANLRMHMRAH 232 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MYSMTGQDTV SSFSLEPDSS SSGAVLPQDQ NHSTSLLYSL SVLKEKVRQA KSLVGVLIAP 60 PDHHQSQQQQ QLPESTTMGA LASMNNVIQE IIVTASSMMF TCQQMALVAP GNDTRSEPNF 120 SISTAGRSNI RDAAFYSTND QTLDWFSTEN YNNCPTRDVI SRSHGQVETK EFPQRVETNN 180 ALQVQNLPPK NSSYDIIELD AADLLAKYTH YCQVCGKGFK RDANLRMHMR AHGDEYKTSI 240 ALSNPLKNNN KQNSAENIHG SSDADCSVKL PRKYSCPQEG CRWNQKHAKF QPLKSMICVK 300 NHYKRSHCPK MYVCKRCNRK QFSVLSDLRT HEKHCGDLRW QCSCGTTFSR KDKLMGHVAL 360 KSEDVASPAA IAALQVPDTP SGHPGQPRAS GEGEVIGNSA GNHRNPSSST SNPSSTTPAA 420 SELLHVVARF CSATETPPSL LD

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MYSMTGQDTV SSFSLEPDSS SSGAVLPQDQ NHSTSLLYSL SVLKEKVRQA KSLVGVLIAP  60
PDHHQSQQQQ QLPESTTMGA LASMNNVIQE IIVTASSMMF TCQQMALVAP GNDTRSEPNF  120
SISTAGRSNI RDAAFYSTND QTLDWFSTEN YNNCPTRDVI SRSHGQVETK EFPQRVETNN  180
ALQVQNLPPK NSSYDIIELD AADLLAKYTH YCQVCGKGFK RDANLRMHMR AHGDEYKTSI  240
ALSNPLKNNN KQNSAENIHG SSDADCSVKL PRKYSCPQEG CRWNQKHAKF QPLKSMICVK  300
NHYKRSHCPK MYVCKRCNRK QFSVLSDLRT HEKHCGDLRW QCSCGTTFSR KDKLMGHVAL  360
KSEDVASPAA IAALQVPDTP SGHPGQPRAS GEGEVIGNSA GNHRNPSSST SNPSSTTPAA  420
SELLHVVARF CSATETPPSL LD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-104	C2H2 family protein