PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008967.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 525aa MW: 57281.3 Da PI: 8.7629

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008967.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Rmu_sc0008967.1_g000004.1 76 FVCEVCNKGFQREQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	12.4	0.00047	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Rmu_sc0008967.1_g000004.1 152 WKCEKCSKRYAVQSDWKAHSKIC 174 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MQPTSYQQVD ENMSNLTCAS GDLSASANSS IRNDSSSSTQ QQQPPQKKKR NLPGNPDPDA 60 EVIALSPKSL MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQRTNK EVRKKVYLCP 120 EPTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKR YAVQSDWKAH SKICGTREYR 180 CDCGTLFSRR DSFITHRAFC DALAQENSNA ARAINPLLSS SLPQLHGGFQ PHHLSHHHVK 240 REVQDLQLQL PPWMGGEATA SAGPSHHLSS NINLSSSSPL FSTSSFDHQQ SFLHQNPNPS 300 SSDFQPSASA HMSATALLQK ASEMGATVSK PSSMFLKPHD QQHQASHMMP ETTAFGSFME 360 QAGANSGGAA AASNNSLLHD MMMMTSHLQQ SSSAARGGFD QLSSSSSFGD HHHQGFNGSM 420 VMGSFAQNVN PSPQKKLITG ESQLRRTSST TDGGGGGGSS GGGGMNEGMT RDFLGLRAFS 480 SQDDQDFFNM AAAHGLDQHV VNSTSSANYN GQQHNHQNQT SWQGN

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MQPTSYQQVD ENMSNLTCAS GDLSASANSS IRNDSSSSTQ QQQPPQKKKR NLPGNPDPDA  60
EVIALSPKSL MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQRTNK EVRKKVYLCP  120
EPTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKR YAVQSDWKAH SKICGTREYR  180
CDCGTLFSRR DSFITHRAFC DALAQENSNA ARAINPLLSS SLPQLHGGFQ PHHLSHHHVK  240
REVQDLQLQL PPWMGGEATA SAGPSHHLSS NINLSSSSPL FSTSSFDHQQ SFLHQNPNPS  300
SSDFQPSASA HMSATALLQK ASEMGATVSK PSSMFLKPHD QQHQASHMMP ETTAFGSFME  360
QAGANSGGAA AASNNSLLHD MMMMTSHLQQ SSSAARGGFD QLSSSSSFGD HHHQGFNGSM  420
VMGSFAQNVN PSPQKKLITG ESQLRRTSST TDGGGGGGSS GGGGMNEGMT RDFLGLRAFS  480
SQDDQDFFNM AAAHGLDQHV VNSTSSANYN GQQHNHQNQT SWQGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	115	KLKQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	C2H2 family protein