PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008916.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 350aa MW: 40374.6 Da PI: 5.2533

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008916.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.7	7e-37	27	119	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl+k+yei+ed+++++++sws+ +nsfvv+d++ fa ++LpkyFkh nf+SFvRQLn+YgF+kv++++ weF+h+ Rmu_sc0008916.1_g000004.1 27 FLNKTYEIVEDSTTNHIVSWSKANNSFVVWDPQAFAISLLPKYFKHGNFSSFVRQLNTYGFRKVDTDK---------WEFAHEV 101 9**************************************************************999.........*** PP XXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkkse 103 F +g+k+ll++i+r++++ Rmu_sc0008916.1_g000004.1 102 FLRGQKHLLKNIRRRRTS 119 ************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MNPQGQVKEA PLPVPLERLN DQGPPPFLNK TYEIVEDSTT NHIVSWSKAN NSFVVWDPQA 60 FAISLLPKYF KHGNFSSFVR QLNTYGFRKV DTDKWEFAHE VFLRGQKHLL KNIRRRRTSH 120 HNVHYGSKQD LDSCIEVGSF GSLDGEIDQL RRDKEVLMGE LVKLRQQQQT ARLHLHGMED 180 RLKRTEMKQQ QMMNFLARAM QNPNFLQQLV QKKERKKQLE EAITKKRRRT IEGPSSIEVG 240 ALGQGGGEAV VKVEPEYYGD ISELDVSGLD NFAMDMPVTD ENEKVHDGEE CMEKEEEYER 300 RGKDLSAVFW KEFLNEGVDE EIEVLGVQEE DEEDVSVLIE QLGCLVSKPK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MNPQGQVKEA PLPVPLERLN DQGPPPFLNK TYEIVEDSTT NHIVSWSKAN NSFVVWDPQA  60
FAISLLPKYF KHGNFSSFVR QLNTYGFRKV DTDKWEFAHE VFLRGQKHLL KNIRRRRTSH  120
HNVHYGSKQD LDSCIEVGSF GSLDGEIDQL RRDKEVLMGE LVKLRQQQQT ARLHLHGMED  180
RLKRTEMKQQ QMMNFLARAM QNPNFLQQLV QKKERKKQLE EAITKKRRRT IEGPSSIEVG  240
ALGQGGGEAV VKVEPEYYGD ISELDVSGLD NFAMDMPVTD ENEKVHDGEE CMEKEEEYER  300
RGKDLSAVFW KEFLNEGVDE EIEVLGVQEE DEEDVSVLIE QLGCLVSKPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	117	RGQKHLLKNIRRRR
2	215	229	RKKQLEEAITKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-119	HSF family protein