PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0008835.1_g000013.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 460aa    MW: 52451.2 Da    PI: 4.2222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0008835.1_g000013.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.32.1e-21151492128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk..kvka.....eekewyfFskrdkkyatgkrknr 76 
                                 pG rF P d+elv +yLk+ ++g++++  +  + ++d+y + ePw++ +  k+k       +k++yfF++++k ++t+kr +r
  Rmu_sc0008835.1_g000013.1  15 LPGQRFCPMDDELVLFYLKPMLSGQNVPGRNRvVFDCDLYGHqEPWEIWEafKTKRphdlrLNKDIYFFTQHKKMSSTDKRVRR 98 
                                59************************8775544999****8879****742422224333334588****************** PP

                        NAM  77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 + sg+Wk   + k++    +g++vglkk  ++ +  + + ++  W++ e+ l
  Rmu_sc0008835.1_g000013.1  99 NVGSGTWKGDDSGKPIRYVeTGRVVGLKKRYTYKN--DDSVHNGCWILYEFYL 149
                                ********9999999976658999********985..4445599******976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    
MQREFPMENS RGNQLPGQRF CPMDDELVLF YLKPMLSGQN VPGRNRVVFD CDLYGHQEPW  60
EIWEAFKTKR PHDLRLNKDI YFFTQHKKMS STDKRVRRNV GSGTWKGDDS GKPIRYVETG  120
RVVGLKKRYT YKNDDSVHNG CWILYEFYLD RSLRDKKQKV KDYVLCLLRK NGEPKTKIEK  180
KRKQREEEEV LENNYALNDG ENSKREQEEL LELQAKRQRT VPFIGNAPPT MTSEDDAAFA  240
AELEDSLECF EDENAPLTIP SEEDASFAAE LEESLECFED DNAPSEARAI GFQAEENGGL  300
QQLAAEVQSG PSFVDNHGIF NPLPEEDFIL AEMLEEMGMV EIEEPVLNGK SINIDVAEEN  360
VENNTLLSAP RSSMSAAYDA CNDMSYLSSA NGCIDLCESN NVCGGSIGFQ DNGAYWVESL  420
VEVPSTVEQQ KTADEDCLDW LESINFGPEE NNFLFSEMQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174183PKTKIEKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-15NAC family protein