PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008490.1_g000016.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CAMTA

Protein Properties

Length: 1023aa MW: 114976 Da PI: 8.4284

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008490.1_g000016.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.7	3.3e-51	19	135	1	118
CG-1 1 llkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycy 84 ll+ k+rwl++ ei ++L+n++++ +e++++p+sgsl+Ly+r ++r frkDGy wkk kdgk+v+E+he+LK ggve+l+cy Rmu_sc0008490.1_g000016.1 19 LLQAKHRWLRPAEIFEVLQNHSRFC-LSEPADEPSSGSLFLYDRNVLRSFRKDGYRWKKTKDGKAVKEAHERLKAGGVEALHCY 101 56789****************98.6799************************************************** PP CG-1 85 YahseenptfqrrcywlLeeelekivlvhylevk 118 Yah+een++fqrrcyw++ee l++ivlvhy+evk Rmu_sc0008490.1_g000016.1 102 YAHGEENENFQRRCYWMIEEPLSHIVLVHYREVK 135 *****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence
MAARKRQRLD DQLELPQILL QAKHRWLRPA EIFEVLQNHS RFCLSEPADE PSSGSLFLYD 60 RNVLRSFRKD GYRWKKTKDG KAVKEAHERL KAGGVEALHC YYAHGEENEN FQRRCYWMIE 120 EPLSHIVLVH YREVKTSEGN LSCSSKLPIN RNMHSDTAYH ASTSFPGGVN ADELLNSLGP 180 PCHMNLDKQN DSSVHRHSDK QNDPRILKNL DSSDQCMNTE LGDLTELQMS SSRDHSSTIA 240 SENGNDGSGA LQPVQIAIPG PSLFQDLLFN IIDLSPNWAY ENSETEVLVV GKFLKNQELE 300 SFKWSCMFGE VEVPAEVVAD GVLRCYTPVH RAARIPFYVT RSNRLPCSEV RIFEYRVNQI 360 QDGCEDDTLV MRFGRILSPS FTYSSFNPQD KYRQYDPISV VEKFDLTRKI SSLLKNGNEE 420 RAEMIKLFPD EFSLDRVKAQ LLQQFLKDKF RKWLLQKMAV GGNGLGVLDE GGQGVLHVGA 480 ALGYDWVFLP MTMAGVTVNF PDVNGWTALH WAAFRGRESA VSLLIGLGAA PGALTDPCTK 540 SPTGKTPADL ASEKGYKGIA AYLSSVLILD INDANSAGSS REKLVQPVPE RIPAFSSDGD 600 LDDGLSMRAH VTGHQVKKNY GMGWAGRTVG MVLRWRGRGK RRRLGYKNLW DDYALINISY 660 DFLKIQAHVT DHLVKKNYGM GWAVRTVGMI LRWRGRGKRR RLGYKNLWDH DCIRTLRPTT 720 TIGSMWEWAT RSISRRRGGR GGGGSFWVRS ADLGRNMPAE MGGLVDTEEK ELVLDVGVIG 780 DGGYWRNGLG NDLIIDSSTK SVHREKASLD RSSTADSSLV ADGKSGITYS NGDHEIESVF 840 THGEDEHARS PNGSLAGRTA VDSPSGEFLL RGSDSEKHKD FFGSDDYGVN PVRTGSPNAD 900 TAFQKKSIFF EDSVPSTPVS RFANSPRYSH QVKKNYGMGW AIRTVGMILR WRGRGKRRRL 960 GYKYFWDDYL QLSESPYKPI YKFTCVLRWL GLEPPSGGPY DYEFLKIQAH ITEGNVVDEL 1020 SHV

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence

MAARKRQRLD DQLELPQILL QAKHRWLRPA EIFEVLQNHS RFCLSEPADE PSSGSLFLYD  60
RNVLRSFRKD GYRWKKTKDG KAVKEAHERL KAGGVEALHC YYAHGEENEN FQRRCYWMIE  120
EPLSHIVLVH YREVKTSEGN LSCSSKLPIN RNMHSDTAYH ASTSFPGGVN ADELLNSLGP  180
PCHMNLDKQN DSSVHRHSDK QNDPRILKNL DSSDQCMNTE LGDLTELQMS SSRDHSSTIA  240
SENGNDGSGA LQPVQIAIPG PSLFQDLLFN IIDLSPNWAY ENSETEVLVV GKFLKNQELE  300
SFKWSCMFGE VEVPAEVVAD GVLRCYTPVH RAARIPFYVT RSNRLPCSEV RIFEYRVNQI  360
QDGCEDDTLV MRFGRILSPS FTYSSFNPQD KYRQYDPISV VEKFDLTRKI SSLLKNGNEE  420
RAEMIKLFPD EFSLDRVKAQ LLQQFLKDKF RKWLLQKMAV GGNGLGVLDE GGQGVLHVGA  480
ALGYDWVFLP MTMAGVTVNF PDVNGWTALH WAAFRGRESA VSLLIGLGAA PGALTDPCTK  540
SPTGKTPADL ASEKGYKGIA AYLSSVLILD INDANSAGSS REKLVQPVPE RIPAFSSDGD  600
LDDGLSMRAH VTGHQVKKNY GMGWAGRTVG MVLRWRGRGK RRRLGYKNLW DDYALINISY  660
DFLKIQAHVT DHLVKKNYGM GWAVRTVGMI LRWRGRGKRR RLGYKNLWDH DCIRTLRPTT  720
TIGSMWEWAT RSISRRRGGR GGGGSFWVRS ADLGRNMPAE MGGLVDTEEK ELVLDVGVIG  780
DGGYWRNGLG NDLIIDSSTK SVHREKASLD RSSTADSSLV ADGKSGITYS NGDHEIESVF  840
THGEDEHARS PNGSLAGRTA VDSPSGEFLL RGSDSEKHKD FFGSDDYGVN PVRTGSPNAD  900
TAFQKKSIFF EDSVPSTPVS RFANSPRYSH QVKKNYGMGW AIRTVGMILR WRGRGKRRRL  960
GYKYFWDDYL QLSESPYKPI YKFTCVLRWL GLEPPSGGPY DYEFLKIQAH ITEGNVVDEL  1020
SHV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	640	644	KRRRL
2	698	702	KRRRL
3	738	744	GGRGGGG
4	956	960	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	1e-78	CAMTA family protein