PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0008231.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 670aa    MW: 76998.7 Da    PI: 6.2673
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0008231.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.12.5e-1122996682374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++ L +cA+av+s ++  a++lL+++++++sp+g ++qRla+yf++ L+arl++ ++  ++ l +++ts    +e l a++++ 
  Rmu_sc0008231.1_g000001.1 299 TTMLNQCAQAVASYEQGTASELLKKIRQHSSPHGHATQRLAHYFANSLEARLTGVGTPSFSPLFSRQTS---AAEYLLAYQVYT 379
                                5789**************************************************999999888888888...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                  +P+  +s+l aN++I++ +++e+r+HiiDf+is+G+QWp L+q L++Rp+gpp+l iTg+++p++g   +e++eetg+rLa+
  Rmu_sc0008231.1_g000001.1 380 TSCPFKMMSQLFANRTIMKLAKNETRLHIIDFGISYGFQWPFLIQHLSERPNGPPKLHITGIEHPQPGfrPRERVEETGRRLAR 463
                                ************************************************************************************ PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                ++++++vpfe++v +++r+e+++ e+L+++++E ++Vn+  +l +++de+v  +s+rd+vL+l+k++ P+++++   +  +n++
  Rmu_sc0008231.1_g000001.1 464 YCAKFNVPFEYDV-IVQRWETIQCEDLKIDRNELVVVNCLNRLRHIHDETVMENSPRDTVLNLIKNIDPHLFIHGIVNGMYNTP 546
                                ************9.7********************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 F++rf eal +y alfd++ea++pre+e r+ +Ere  gr+i+n+vaceg er++r et++kW+ +  +aG+k++pl++++ k
  Rmu_sc0008231.1_g000001.1 547 FFATRFKEALLHYYALFDMYEATIPREDERRMIIEREKSGRDIMNIVACEGVERFQRPETYKKWQIKNVRAGLKQLPLDQEELK 630
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ++k l + +++d +rvee+ +++++gWk+r L ++S W+
  Rmu_sc0008231.1_g000001.1 631 KVKNLYKGYHDD-FRVEEDGQWILQGWKGRILRALSLWT 668
                                **********66.*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    
MDTPFDRFTG RIEGLYFGHA PTSITFNPNL ADGCKVTQES TNTLIHPANL EYPSDLSKSL  60
SPASEEETVD VSYSNNPVIK YISDILLEED LEDESCMLQD YLAVQAAEKS FYDVLNPNDP  120
HSPNKASLGE SFSDTLLVSD SLFEKQSLGN FGNVGEANKF LPNGEFDIID KERYELLPVA  180
RSNLVKGNLA SDKKNDVNNP TDGMKRKKNH HREDEGCPEE GRSSKQSVVS ADDSEPQEMF  240
DKVLLCQAEH HHREWESCTP HCSMKREETE QLQQNRQPKG SKTNRSKRQN KDEEGVDLTT  300
MLNQCAQAVA SYEQGTASEL LKKIRQHSSP HGHATQRLAH YFANSLEARL TGVGTPSFSP  360
LFSRQTSAAE YLLAYQVYTT SCPFKMMSQL FANRTIMKLA KNETRLHIID FGISYGFQWP  420
FLIQHLSERP NGPPKLHITG IEHPQPGFRP RERVEETGRR LARYCAKFNV PFEYDVIVQR  480
WETIQCEDLK IDRNELVVVN CLNRLRHIHD ETVMENSPRD TVLNLIKNID PHLFIHGIVN  540
GMYNTPFFAT RFKEALLHYY ALFDMYEATI PREDERRMII EREKSGRDIM NIVACEGVER  600
FQRPETYKKW QIKNVRAGLK QLPLDQEELK KVKNLYKGYH DDFRVEEDGQ WILQGWKGRI  660
LRALSLWTPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-166GRAS family protein