PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0008086.1_g000018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 474aa MW: 52897.7 Da PI: 6.3777 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.6 | 4.1e-56 | 23 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdee++++yL++kv ++++++ ++i e+d++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat+sgyWk Rmu_sc0008086.1_g000018.1 23 LPPGFRFHPTDEEIITCYLTEKVVNSNFTA-TAIGEADLNKCEPWDLPNKAKMGEKEWYFFCQRDRKYPTGMRTNRATQSGYWK 105 79*************************999.88***************99999******************************* PP NAM 85 atgkdkevlskkgel....vglkktLvfykgrapkgektdWvmheyrl 128 atgkdke++++k+++ vg+kktLvfy+grapkgekt+Wvmheyrl Rmu_sc0008086.1_g000018.1 106 ATGKDKEIYKRKTNNsnclVGMKKTLVFYTGRAPKGEKTNWVMHEYRL 153 **********844434566***************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence |
MMEEEAVVVN QGGGGGDDEL MALPPGFRFH PTDEEIITCY LTEKVVNSNF TATAIGEADL 60 NKCEPWDLPN KAKMGEKEWY FFCQRDRKYP TGMRTNRATQ SGYWKATGKD KEIYKRKTNN 120 SNCLVGMKKT LVFYTGRAPK GEKTNWVMHE YRLDGKFTHY NLSKPAKDEW VVCRVFHKNM 180 GLKRTSSPLS PTDQGAGGQL LRLNSFGDDF LDSSSSLPPL MDPTPSYDRP AGSYSGYRFD 240 YGEHDDNDSK GKITAAPLSV PSANKTTPAD MQYYFQQVGS STRQINCFQH PNAAAAAASY 300 QMSNPMATPT MLYPQIHHNH QLIPNPSFSF QPNNNPDYYF QQEIRGPRTS FPNNQGSSFD 360 FQSSKLDHQA ILRAMAAAKN RNHQIETSVT TAGSGGLDSR QCKVEQYSSN NQSMFSVSQD 420 TGLSTADMNT TTEISSSVVS KQEIEVGSSN TLYEDHLQSP SVVPISDIEG LWDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-102 | NAC family protein |