PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007807.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 1021aa MW: 112254 Da PI: 7.9917

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007807.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.7	1e-18	345	445	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v Rmu_sc0007807.1_g000001.1 345 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIV 427 89************************555566778***********99899999999.************** PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F++ + +++lv++ +r+ Rmu_sc0007807.1_g000001.1 428 TFSRLE-PGGKLVMGCRRA 445 *665.777777777775 PP

Sequence ? help Back to Top
Protein Sequence Length: 1021 aa Download sequence
MSPSSSSSSS KCCYNSECGE LKPEHPRKAW RLRTGDFAEL CDRCALIYEE GRFCETFHVK 60 ASGWRCCESC GKRVHCGCIV SAQAFTLLDP GGIECVTCAR KHIVLTSNPA WAPTLFFHSP 120 LSDRLKDMSG KNWTQLAGSG PVPWRQAPSL FNSSISSSEL HGRLPYDVDG SMGINNKLNA 180 GERVSVHPLE KKKAEDFSER LMKVNLAIGT PVSFENGNSG NKCMEQSSSC LNISQQPASL 240 KEEPSTPQFV LSVPYVSASE TNGQTNGQVV VTGTNLRPAL PMVKQFNGTL HNGVELSGDT 300 QIRNARPRAD ARGRSPLLPR YWPRFTDQEL QQMSGDSNSV ITPLFEKMLS ASDAGRIGRL 360 VLPKKCAEAY FPPISQPEGL PLKVQDSKGK EWVFQFRFWP NNNSRMYVLE GVTPCIQSMQ 420 LQAGDIVTFS RLEPGGKLVM GCRRASTAPS DQENDTNKMG NGVSAHVDVS ITDTKSGEVF 480 SNAELADPST FPKGDKSSYI SREVEGAKSL ISRKRKNSNL GSKSKRLRIE KEDLIELKIT 540 WEEAQGLLRP PPNHVPTVVV IEGFEFEEYE DGPILGKPTL YATGSKGEKI QWAQCEVCCK 600 WRKLPVNALL PSKWTCSDNS WDPDRSLCSA AQELTTEQLE DLLPGCNLVA PKKIKAAKQD 660 PDNIEALEGL DTLANLAILG EGESLPASAQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ 720 TCICNVCSTV KRRFRTLMMR REKNKSEKEA ETTRKKQQQQ QLLDDETLLC GNAGSSSPNN 780 KVEVLELSDD DFNRTKSPTP PYKGQIDLNI QPEREEDLSP GSDSGGVIKL LQDATERYLR 840 QQRQSLSTSG GGERSMGNKS QRAGGEAGGE PLGNIAILGN SNHDSGNDHP ATLSVKASAS 900 MTATHHAHHS IVDVDLHHRL SVPPSDHQRM TPSNSTIPTP LGFAGFVRQM SGKLSTPESV 960 RRRFLQKVNP GLAELLSDED RWLGIEPGRR EHDDEFRRRD GESRRRGRPA GGMEGGREKF 1020 D

Sequence ? help Back to Top

Protein Sequence Length: 1021 aa Download sequence

MSPSSSSSSS KCCYNSECGE LKPEHPRKAW RLRTGDFAEL CDRCALIYEE GRFCETFHVK  60
ASGWRCCESC GKRVHCGCIV SAQAFTLLDP GGIECVTCAR KHIVLTSNPA WAPTLFFHSP  120
LSDRLKDMSG KNWTQLAGSG PVPWRQAPSL FNSSISSSEL HGRLPYDVDG SMGINNKLNA  180
GERVSVHPLE KKKAEDFSER LMKVNLAIGT PVSFENGNSG NKCMEQSSSC LNISQQPASL  240
KEEPSTPQFV LSVPYVSASE TNGQTNGQVV VTGTNLRPAL PMVKQFNGTL HNGVELSGDT  300
QIRNARPRAD ARGRSPLLPR YWPRFTDQEL QQMSGDSNSV ITPLFEKMLS ASDAGRIGRL  360
VLPKKCAEAY FPPISQPEGL PLKVQDSKGK EWVFQFRFWP NNNSRMYVLE GVTPCIQSMQ  420
LQAGDIVTFS RLEPGGKLVM GCRRASTAPS DQENDTNKMG NGVSAHVDVS ITDTKSGEVF  480
SNAELADPST FPKGDKSSYI SREVEGAKSL ISRKRKNSNL GSKSKRLRIE KEDLIELKIT  540
WEEAQGLLRP PPNHVPTVVV IEGFEFEEYE DGPILGKPTL YATGSKGEKI QWAQCEVCCK  600
WRKLPVNALL PSKWTCSDNS WDPDRSLCSA AQELTTEQLE DLLPGCNLVA PKKIKAAKQD  660
PDNIEALEGL DTLANLAILG EGESLPASAQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ  720
TCICNVCSTV KRRFRTLMMR REKNKSEKEA ETTRKKQQQQ QLLDDETLLC GNAGSSSPNN  780
KVEVLELSDD DFNRTKSPTP PYKGQIDLNI QPEREEDLSP GSDSGGVIKL LQDATERYLR  840
QQRQSLSTSG GGERSMGNKS QRAGGEAGGE PLGNIAILGN SNHDSGNDHP ATLSVKASAS  900
MTATHHAHHS IVDVDLHHRL SVPPSDHQRM TPSNSTIPTP LGFAGFVRQM SGKLSTPESV  960
RRRFLQKVNP GLAELLSDED RWLGIEPGRR EHDDEFRRRD GESRRRGRPA GGMEGGREKF  1020
D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-152	B3 family protein