PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007753.1_g000022.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 374aa MW: 43266.3 Da PI: 4.3222

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007753.1_g000022.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	75.7	1.1e-23	11	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkr 73 l pG rF P ++el+++yLk+kv++k+++ ++ i e+d+y +Pw++ + + a ++k++yfF++++kk+a+g+r Rmu_sc0007753.1_g000022.1 11 LLPGQRFCPMEDELLMFYLKPKVNSKEVPGKDDlICELDLYGDqDPWKIWErfegrR--AndlrKNKDLYFFTQKKKKTARGSR 92 579**********************8886666**9754975355552..1334466799*********** PP NAM 74 knr.atksgyWkatgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128 +r + + g+Wk + ke++ ++++ g kkt ++ ++ + + +W+m ey+l Rmu_sc0007753.1_g000022.1 93 ISRtVGSGGTWKGQNAAKEIYLLDQNQqptttiLGFKKTYTYK--NKGSVHDGRWIMYEYEL 152 5555889********9855554566668888888887..44455689*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MENGGYDGLL LLPGQRFCPM EDELLMFYLK PKVNSKEVPG KDDLICELDL YGDQDPWKIW 60 ERFEGRRAND LRKNKDLYFF TQKKKKTARG SRISRTVGSG GTWKGQNAAK EIYLLDQNQQ 120 PTTTILGFKK TYTYKNKGSV HDGRWIMYEY ELDESQLVHK KQVNKKDYVL CLLRKNDEQP 180 EKKRKRQEEE EMLGDSDQDD DGNDNLNIDE PQAKWQCLLP CAGNVATPSF DFAEAEKWFD 240 QQLSQPALLE PVQESGPTTL EAEPWPVALQ VDENMELEHF GVDQGAQLLE LAELEKWFKD 300 EFEAQPQLGE GNLEQKLAGD EMSGLQYHQD ENHVQQMANL PNIFLEELMN DERPNTMEVG 360 DWNAANSDFE YLAF

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MENGGYDGLL LLPGQRFCPM EDELLMFYLK PKVNSKEVPG KDDLICELDL YGDQDPWKIW  60
ERFEGRRAND LRKNKDLYFF TQKKKKTARG SRISRTVGSG GTWKGQNAAK EIYLLDQNQQ  120
PTTTILGFKK TYTYKNKGSV HDGRWIMYEY ELDESQLVHK KQVNKKDYVL CLLRKNDEQP  180
EKKRKRQEEE EMLGDSDQDD DGNDNLNIDE PQAKWQCLLP CAGNVATPSF DFAEAEKWFD  240
QQLSQPALLE PVQESGPTTL EAEPWPVALQ VDENMELEHF GVDQGAQLLE LAELEKWFKD  300
EFEAQPQLGE GNLEQKLAGD EMSGLQYHQD ENHVQQMANL PNIFLEELMN DERPNTMEVG  360
DWNAANSDFE YLAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	185	KKDYVLCLLRKNDEQPEKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71930.1	7e-18	NAC family protein