PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007648.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Whirly

Protein Properties

Length: 510aa MW: 56703.4 Da PI: 6.6236

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007648.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	216.7	2.2e-67	93	231	1	139
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg 84 s+yk+kaal+v++++p+f+aldsg++k++r+G++ll++a+a+++r ydW++kq+f+ls+te++++v+l+++esceffhdp++++ Rmu_sc0007648.1_g000008.1 93 SIYKGKAALTVEPKAPEFTALDSGAFKMSREGFVLLQFAPAAGVRVYDWSRKQVFSLSVTEIGSIVSLGARESCEFFHDPFKGK 176 79******************************************************************************** PP Whirly 85 sneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 s+eGkvrk+lkvePlpdGsG f+nlsv+n+l++ +e++++Pv++aefavl+s+++ Rmu_sc0007648.1_g000008.1 177 SEEGKVRKVLKVEPLPDGSGRFFNLSVQNKLINLDENIYIPVTRAEFAVLNSAFN 231 *************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MLKLEYSLSS PVAVQNPNHS LPSKARVFST NSFGFAPNST SFGKRRLALK CRQSEYFEQQ 60 RLTPPTPPST AASAAQSPSG ATAVPARFYV GHSIYKGKAA LTVEPKAPEF TALDSGAFKM 120 SREGFVLLQF APAAGVRVYD WSRKQVFSLS VTEIGSIVSL GARESCEFFH DPFKGKSEEG 180 KVRKVLKVEP LPDGSGRFFN LSVQNKLINL DENIYIPVTR AEFAVLNSAF NYILPYLIGW 240 HAYANSIKSE DMSRVNNATP RYGGDFEWSR NREYETLICE YLKSKGVPED EHPAVVDKLF 300 LVVEAAVSPV DAVVVFVWDA IYRVGDGHEP YRPNGIPASR SSIQVPGDQP HLSPLPIPNA 360 NRRRLSPAQP AKIKREYETL ICEYLKSKGV PEDEHPAVVD KLFLVVEAAV SPVDAVVVFV 420 WDAIYRVGDG HEPYRPNGIP ASRSSIQGLE QVTLDTDTSL SCAICLEDFE QEPTTWLPCR 480 HHFHVHCIVQ CLEINHTCPL CRYPMPTEED

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MLKLEYSLSS PVAVQNPNHS LPSKARVFST NSFGFAPNST SFGKRRLALK CRQSEYFEQQ  60
RLTPPTPPST AASAAQSPSG ATAVPARFYV GHSIYKGKAA LTVEPKAPEF TALDSGAFKM  120
SREGFVLLQF APAAGVRVYD WSRKQVFSLS VTEIGSIVSL GARESCEFFH DPFKGKSEEG  180
KVRKVLKVEP LPDGSGRFFN LSVQNKLINL DENIYIPVTR AEFAVLNSAF NYILPYLIGW  240
HAYANSIKSE DMSRVNNATP RYGGDFEWSR NREYETLICE YLKSKGVPED EHPAVVDKLF  300
LVVEAAVSPV DAVVVFVWDA IYRVGDGHEP YRPNGIPASR SSIQVPGDQP HLSPLPIPNA  360
NRRRLSPAQP AKIKREYETL ICEYLKSKGV PEDEHPAVVD KLFLVVEAAV SPVDAVVVFV  420
WDAIYRVGDG HEPYRPNGIP ASRSSIQGLE QVTLDTDTSL SCAICLEDFE QEPTTWLPCR  480
HHFHVHCIVQ CLEINHTCPL CRYPMPTEED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	1e-124	Whirly family protein