PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007627.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 535aa    MW: 60466.8 Da    PI: 4.3661
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007627.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS134.89.2e-421605322374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL + Ae +++g++el + +   +++ +sp g+++ Rla+++ +      ++     ++    +++   + ++   a+klf+
  Rmu_sc0007627.1_g000002.1 160 RHLLKAHAESMANGQKELEEVIFRCIKDKVSPIGQSLDRLAFHLCREVVDDQQG----DVD--YLKQQ---SYKNFEPAFKLFY 234
                                79999*************************************977654444444....232..23333...366777899**** PP

                       GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetger 164
                                + +P+ kf+h +aN+aIle++ ++ e+vHi+Dfd+++G+Q   +++aLa+R +    lR+T+++ ++++     + +  e +++
  Rmu_sc0007627.1_g000002.1 235 QNFPYGKFAHYAANSAILESIPEDtEMVHIVDFDMGEGVQLSQMIEALAQRLKT---LRVTAIKWEDEEsdcvLQGRFDERKKQ 315
                                *********************88779*************************765...******9987777788788999***** PP

                       GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk........ 237
                                L++ A+++g+ ++ + +   +ledl  e  ++k+   +E la n++++l ++ +++  ++s   e+L+l k+l +k        
  Rmu_sc0007627.1_g000002.1 316 LQNHARSFGLYLKVEEV---ALEDLVGEIKKTKKrgvKEFLAFNCMVSLPHMRRRR--SRSLALEFLRLAKDLLAKsgnyrtgk 394
                                **************997...78888443334444779*************998443..34445799*99999966545555555 PP

                       GRAS 238 ..vvvvveqe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekW 315
                                  +v++ + e + +  n+ +F   f   l +y al +s+e+++p++  e+r+++E  +l++ +++    ++     +  +++ W
  Rmu_sc0007627.1_g000002.1 395 tgIVTFGDGEaCGRleNQLDFSSFFDGNLVHYQALSESMESNFPSHLaEARMVMESIFLAPYVSSQAWFQNWTEMREDCHVQPW 478
                                559******9644458999*************************98779**************999888888766666678999 PP

                       GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                                      +G++  +ls+++  +ak ++   +s g r+  e+ +++ l W+++pLv vS W+
  Rmu_sc0007627.1_g000002.1 479 ------FGLEGRRLSKENLLEAKGIVGDESSYGIRIGgENGNEMALEWRGNPLVRVSTWE 532
                                ......8*****************************966677888**************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    
MEYSALLEPS WPFHNLVNSP FDQSDPMNMD DTQMGSSDFS SLIINSDEFS DLSDTCSDPF  60
ASLFSGNDLI QVSSQVEVFP MNLEEFDPNL MIDCLYGSFL EGSEGSLPSQ EISSQFSIEG  120
DCVSNSLETS EVSSMDSTSI QTSLTLPAEV VEIDNESSIR HLLKAHAESM ANGQKELEEV  180
IFRCIKDKVS PIGQSLDRLA FHLCREVVDD QQGDVDYLKQ QSYKNFEPAF KLFYQNFPYG  240
KFAHYAANSA ILESIPEDTE MVHIVDFDMG EGVQLSQMIE ALAQRLKTLR VTAIKWEDEE  300
SDCVLQGRFD ERKKQLQNHA RSFGLYLKVE EVALEDLVGE IKKTKKRGVK EFLAFNCMVS  360
LPHMRRRRSR SLALEFLRLA KDLLAKSGNY RTGKTGIVTF GDGEACGRLE NQLDFSSFFD  420
GNLVHYQALS ESMESNFPSH LAEARMVMES IFLAPYVSSQ AWFQNWTEMR EDCHVQPWFG  480
LEGRRLSKEN LLEAKGIVGD ESSYGIRIGG ENGNEMALEW RGNPLVRVST WENQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.18e-22GRAS family protein