PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0007617.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | DBB | ||||||||
Protein Properties | Length: 215aa MW: 23205.3 Da PI: 5.2851 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 6.2e-07 | 3 | 47 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e e++ C ++ lC C +++H H++vpl Rmu_sc0007617.1_g000006.1 3 IRCNACEVAEAEVLCCADEAALCWGCDQKIHAAnklaskHQRVPL 47 58******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 29.7 | 1.3e-09 | 54 | 94 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +kC+ ++e +fC +++ llC++C +++H H Rmu_sc0007617.1_g000006.1 54 LPKCDFCQETVGYFFCLEDRALLCRKCDVAIHTAnsyvssH 94 689*******9*********************554555556 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MKIRCNACEV AEAEVLCCAD EAALCWGCDQ KIHAANKLAS KHQRVPLSSS SSPLPKCDFC 60 QETVGYFFCL EDRALLCRKC DVAIHTANSY VSSHQRFLLP GVEVGLEATE PCNSPSTKEK 120 LSSVETVSES ASSPSIPRSV IDHFSTGEIK DTIPMQIGGI GTLVSDKIPL NRSTTTSVGT 180 ISGWLLEECL GLTYPNQNNG SLDTMPSKVY GSYYA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 4e-59 | DBB family protein |