PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007546.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 286aa    MW: 32061.3 Da    PI: 8.8238
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007546.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP68.96.2e-2273156271
                    E2F_TDP   2 keksLrlltqkflkllek..seegivtlnevakeLvse.......dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                                +eksL ll+q+f+kl+ +  s+++ ++l+e+ak L+          +++k+RRiYDi+NVL+++nliek     + k+++rw g
  Rmu_sc0007546.1_g000012.1  73 REKSLALLAQNFVKLFVCtgSKSESISLDEAAKLLLGVgdaqnvsVMRTKVRRIYDIANVLSSVNLIEKthtadTGKSAYRWLG 156
                                79************988855777************87788**9*9999************************999*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MDLWICELSL NHGHFLLPGN PQTSRKSKNT YTWKGFGAVP NALKELKEEC RDLIPISAAC  60
NNNNNNPLDE TKREKSLALL AQNFVKLFVC TGSKSESISL DEAAKLLLGV GDAQNVSVMR  120
TKVRRIYDIA NVLSSVNLIE KTHTADTGKS AYRWLGLNGR RDGLNLNLEP NLEQAKKRSF  180
GIDLTNASSK RSKVVEKRVQ DQGEVENCNS DGCGANESSK SYQFGPFAPV EVLRARKGVD  240
INKVCWESLG AYYRPQYQNQ VMKELFSHYS EAWMLWNSQV AEKNPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.23e-60E2F/DP family protein