PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007457.1_g000017.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 671aa MW: 72657.9 Da PI: 7.1455

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007457.1_g000017.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.4	3.9e-30	295	354	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg Hnh+ Rmu_sc0007457.1_g000017.1 295 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCADDMSILITTYEGAHNHP 354 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MEAAVKKSYH GDQEQEEKRV VLLESRTATA LDDDHHGEGR YSREELVIKA GNEGAGQENN 60 EMKSSSPNQK DLSCGKQIST TSNIKGSSSV EPDHSVASNS SSLKEQDYQL ESARAEMGEV 120 REENQRLKKY LDRMMEDYQT LQMQYHDIQQ KAIKSSKDDN ATNNHQDDDE SEQLVSLSLG 180 SFSSKRKKVE EKNKSPSTQV GKEKDTDDEK SLSLGLDCKY EAPAKSSSAT TDQVPLSNPS 240 PSSSVEEVRK EEAGETWPPK KVLKTMRSIE DEVAQQNPVK KARVSVRARC DTPTMNDGCQ 300 WRKYGQKIAK GNPCPRAYYR CTIAPSCPVR KQVQRCADDM SILITTYEGA HNHPLPLSAT 360 AMASTTSAAA SMLLSGSSSS SSLPGLNPSA GATTAAADLR GYNYYVSDNS RSRFYIPNSS 420 MSSSLPTITL DLTSNPSSSS SSQLNKFASS TLNSAHQVPY PPTSLNFGSS DQSNNTMPWT 480 NSGFLSYGNG TQLPYNNKNP IIGRQQQQPM QNSMYQNYMQ KNNPTPQQFQ LPDPIAAATK 540 AITADPSFQS ALAAALTSII GGSSNGGSGS SNNNQNAGGD HFNNIMAQKL KWGEHFPGIS 600 SSNGPTASSY LQTAIKGNNI TGCASSYLNK PNSSSVNISQ PGSLMFLQPP NSLPFATHKS 660 ASTSPSEDHK S

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MEAAVKKSYH GDQEQEEKRV VLLESRTATA LDDDHHGEGR YSREELVIKA GNEGAGQENN  60
EMKSSSPNQK DLSCGKQIST TSNIKGSSSV EPDHSVASNS SSLKEQDYQL ESARAEMGEV  120
REENQRLKKY LDRMMEDYQT LQMQYHDIQQ KAIKSSKDDN ATNNHQDDDE SEQLVSLSLG  180
SFSSKRKKVE EKNKSPSTQV GKEKDTDDEK SLSLGLDCKY EAPAKSSSAT TDQVPLSNPS  240
PSSSVEEVRK EEAGETWPPK KVLKTMRSIE DEVAQQNPVK KARVSVRARC DTPTMNDGCQ  300
WRKYGQKIAK GNPCPRAYYR CTIAPSCPVR KQVQRCADDM SILITTYEGA HNHPLPLSAT  360
AMASTTSAAA SMLLSGSSSS SSLPGLNPSA GATTAAADLR GYNYYVSDNS RSRFYIPNSS  420
MSSSLPTITL DLTSNPSSSS SSQLNKFASS TLNSAHQVPY PPTSLNFGSS DQSNNTMPWT  480
NSGFLSYGNG TQLPYNNKNP IIGRQQQQPM QNSMYQNYMQ KNNPTPQQFQ LPDPIAAATK  540
AITADPSFQS ALAAALTSII GGSSNGGSGS SNNNQNAGGD HFNNIMAQKL KWGEHFPGIS  600
SSNGPTASSY LQTAIKGNNI TGCASSYLNK PNSSSVNISQ PGSLMFLQPP NSLPFATHKS  660
ASTSPSEDHK S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	7e-68	WRKY family protein