PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0007451.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 750aa MW: 86626.4 Da PI: 8.1156 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.9 | 5.2e-21 | 38 | 120 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fY++YAke GF+v+ +s+k+ ng i+++++vCskeg+++ + kk r+r++tr +Cka+++v k+ gk++vt +++ Rmu_sc0007451.1_g000006.1 38 FYKSYAKESGFDVKSYTSEKK--NGVIVRKEYVCSKEGTSKLTGKK-----RNRNQTRAKCKARIVVVKRAtIGKYVVTIFVEG 114 **************9998887..******************99888.....99***********999888879*********** PP FAR1 85 HnHela 90 H+H+l+ Rmu_sc0007451.1_g000006.1 115 HSHPLT 120 ****97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 750 aa Download sequence |
MESEQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SYAKESGFDV KSYTSEKKNG 60 VIVRKEYVCS KEGTSKLTGK KRNRNQTRAK CKARIVVVKR ATIGKYVVTI FVEGHSHPLT 120 TPRRKHLTKI HREVSLVHRS LTKQLTAVNV PTCTQFDFLR VHSGGLENIG CLQQDIYNYK 180 RDCRKEVKGH DGDMLHEYFL LEKEKDPSFI FKIESDNKNR ITHIFWADAI SRRSYKFYGD 240 VVIFDTTYNT NTYSLIFAPL VGVNNHGQTI ILACAFLSNE TIDSFVWFFK EFLDAMPGDA 300 PRMIITDQDP AMTKAISEVL PQTFHRYCSW HILNKFSEKI DPGKYTRYYY EFQDCIWNSE 360 NRDEFDASWT SIVESSGLSD NGWLKTMYDI RSTWVPAYVN HMFSAGMSSS QRAESGHAFY 420 KRFVSKENTL LDFMVQFNRA ITRQRHMELM EDHVDINEKP NFASPFEMAE QMARVYTHEC 480 FKEFYDQLSQ CCNYRFEFSH ENDTYMVYIA LRKKMENPKG REIIYAKESD FVSCSCKKFE 540 TVGIPCRHIM AFLIFILLVD RLPDQYILKR WTKSGKTERV FDDLGVEITD NRDLLARRSR 600 LCQYAVDVID KVMGSEEASG LFLDSLKSVL EQYNSMVADG ETVKSAIVLA QQKSLPSQHI 660 YNEPVQVRAK GCGKRLKAGK EKGRLKAAKK ANGKGRFCHG CKKNDQQHDK RNCPELKNKN 720 GISIPQTGED RSDSSTDEEE YSSTGVDESA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-104 | FAR1 family protein |