PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007276.1_g000014.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 311aa    MW: 35145.9 Da    PI: 7.8618
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007276.1_g000014.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.7e-21953145
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               kr en+  rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  Rmu_sc0007276.1_g000014.1  9 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPTGK 53
                               689****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIVLLMFSP TGKPSLCSGK  60
RSSIEEVIAK FSQLTPQERA KRLLQTQLSE IKKRLSCWMN PDKINSVDQL GQMEDSIRES  120
LSQIRTHKEN LQKQQLMSLE CTSQFQNGLH IPFSMSTEQQ LQPLPWIPSN ENRHIVLPED  180
PNLLPHRDIE CSASSSFGSY SGYLGTGKSP EISNSGQENG ILNDLSRTAP LRLQLGGQFS  240
SYLPYNLNML TDTKFQQPTE MSPQENPVDY HVNGSFEAPR PDFFTTQHSW ASTPGPCVVT  300
MFDEHLYSQV S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.25e-83M-type_MADS family protein