PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007104.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family RAV
Protein Properties Length: 312aa    MW: 35702.3 Da    PI: 7.8242
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007104.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.63.2e-0851881153
                        AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                               k g W A+I        +kr++lg++ t+ +Aaka+++a+ k+
  Rmu_sc0007104.1_g000008.1 51 KGGMWGARITYN-----YKRYRLGTYETEIKAAKAYDRAAVKM 88
                               345699998772.....4**********99*********9876 PP
2B341.81.9e-13160246185
                                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                f+k+l++ dv+ ++ + +  ++a+ h    + ++  +   tl+d + rsW++ ++y+++ +++++t+GW +F +  +Lke+D +
  Rmu_sc0007104.1_g000008.1 160 FKKELSHMDVTHKC-FLVQGDYASLHsppiE-DEGWNSFATLYDIHRRSWTFGCSYWQSTQSFIFTSGWGDFLEMYNLKEKDKI 241
                                78899899999888.7779999999999862.33344479*******************************************9 PP

                                EEEE- CS
                         B3  81 vFkld 85 
                                ++++ 
  Rmu_sc0007104.1_g000008.1 242 IIYRC 246
                                99854 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MSMDVSSDST IEMVVQDQNL PPTSPSHQNR CTRSSQQGSS SSKLKGVIPL KGGMWGARIT  60
YNYKRYRLGT YETEIKAAKA YDRAAVKMPR AHSLNFHRSN YSVEESAFQS QCSIEEVLRM  120
LQDKTYSSML QNFILNHSTC VGFHAEAFMK EQEISYDFLF KKELSHMDVT HKCFLVQGDY  180
ASLHSPPIED EGWNSFATLY DIHRRSWTFG CSYWQSTQSF IFTSGWGDFL EMYNLKEKDK  240
IIIYRCRYQG DAVRSKFHLI NVLRSTAESS VVGMTTEQDV GLRGSLNKEL EADCTSEVKK  300
RGFKLFGIEI SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-32RAV family protein