PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0007059.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 241aa MW: 26455.3 Da PI: 5.8601 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Rmu_sc0007059.1_g000004.1 68 YTCTFCRREFRSAQALGGHMNVH 90 9********************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MAELGLLSLT QLQKLALSQA QNPQSNPTSV WMWNPKQAQD QEDDSWEVRA FAEDTGNVMG 60 TTWPPRSYTC TFCRREFRSA QALGGHMNVH RRDRARLHQV QHPSSISINP SAVSSSSSSF 120 IIPTQEFIAA NGGLCLLYQL PNPNNGAFNT STATTPTAPL LNNTIESSSS VPSTLLSITP 180 NPPHDYLMTS SSCLVEPHGV FNSRNNSHCQ YAKRSADQDQ PSRSGVEDIE ELDLELRLGP 240 S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 1e-34 | C2H2 family protein |