PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006984.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 325aa    MW: 36058.4 Da    PI: 6.642
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006984.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-181461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg WT+eEd +l  ++ q+G+++W++I++  g+ R++k+c++rw +yl
  Rmu_sc0006984.1_g000003.1 14 RGQWTPEEDNKLSSYIGQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                               89********************************************97 PP
2Myb_DNA-binding46.58.3e-1568110246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                g +++ E++ +v+++   G++ W++Ia+ ++ gRt++++k++w++
  Rmu_sc0006984.1_g000003.1  68 GQFSEAEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
                                789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIG QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SEAEEQTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLMAEIATTL APPNVANLAE AALGCFKDEM LHLLTKKPID FQFQHSNTTP  180
GNRTATYINN KEEEDDTIEK IKIGLSRAMQ EPDMLHSQKS WDPTGATSAN LTGNCSAFPL  240
HSISGFQYGL STFGNEGGGS PWSQSMCTGS TCTGADQQGH LHDKLDEEIG EESEGGKELR  300
NGSNIFNSDS ILWDLPSDDL MNPIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-116MYB family protein