PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006646.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 547aa MW: 61886.6 Da PI: 7.2704

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006646.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	100	118	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cgk F++ L H+ Rmu_sc0006646.1_g000008.1 100 VCKECGKGFPSLKALCGHM 118 6*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MEEDQNQHKK FVCKFCNRRF QCGKSLGGHI RTHLNKKPTR EKEQEMEEDE FASVTRTAKL 60 SSLDSGPEGQ SGYRLRENPK KTWRFADHKV PSFQFQQEKV CKECGKGFPS LKALCGHMAC 120 HSDKERKLEE FSESSEKQKL VMDSQSDTET SSAPTKQRRV LKRMRENNFE VHGGCSSGSG 180 VEQEQQEVAI SLMMLSRDSG YKGGLNSFGE SSDNNSVILE GKSSSIDMRI STKRGLSYAA 240 KVNDVMDLKR AREKKLNYEE VTVSDNSDSG YYIHEPKKVE SDVSVDGFVR NGEFKKYRAE 300 FGSGFGRYES YDVKSRRAFS SKSEMVKELP REEAYEQVDR GSLKYALRKS TKSGFHRPFT 360 SGSSSVEAYK NVRNSNKYEC LTCNKTFHSH RALGGHRASH TKSNGYSESM YESGENSVDS 420 DESPIPTPES QLVEDNKPYK GKTPINQDLG AKRNSGSKRS KGHECPFCFK VFKSGQALGG 480 HKRSHFVGGC EVKTVVLGQE HQHPEEEEEE HELEVPENEA EMPTLFDLNL PAPMEEEANG 540 NFEYMSW

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MEEDQNQHKK FVCKFCNRRF QCGKSLGGHI RTHLNKKPTR EKEQEMEEDE FASVTRTAKL  60
SSLDSGPEGQ SGYRLRENPK KTWRFADHKV PSFQFQQEKV CKECGKGFPS LKALCGHMAC  120
HSDKERKLEE FSESSEKQKL VMDSQSDTET SSAPTKQRRV LKRMRENNFE VHGGCSSGSG  180
VEQEQQEVAI SLMMLSRDSG YKGGLNSFGE SSDNNSVILE GKSSSIDMRI STKRGLSYAA  240
KVNDVMDLKR AREKKLNYEE VTVSDNSDSG YYIHEPKKVE SDVSVDGFVR NGEFKKYRAE  300
FGSGFGRYES YDVKSRRAFS SKSEMVKELP REEAYEQVDR GSLKYALRKS TKSGFHRPFT  360
SGSSSVEAYK NVRNSNKYEC LTCNKTFHSH RALGGHRASH TKSNGYSESM YESGENSVDS  420
DESPIPTPES QLVEDNKPYK GKTPINQDLG AKRNSGSKRS KGHECPFCFK VFKSGQALGG  480
HKRSHFVGGC EVKTVVLGQE HQHPEEEEEE HELEVPENEA EMPTLFDLNL PAPMEEEANG  540
NFEYMSW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	4e-98	C2H2 family protein