PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006417.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 475aa MW: 54259.7 Da PI: 5.2343

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006417.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.1	1.2e-42	11	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk 79 +p+G+rF Pt+eelv++yLkkk++g + e++++i+e+d++k+eP +Lp+ +++a++ ew+f ++++ ky++++r+nr+tk Rmu_sc0006417.1_g000006.1 11 VPVGYRFLPTEEELVNHYLKKKIHGGNdSEINQIIPEIDLCKYEPAELPAllgtETEAHDMEWFFLTRKAYKYNKSSRSNRSTK 94 599******************99985677778***********656666666788******************* PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWk +gk++ ++++ +++++g+kktL+fy+gr pk++kt+Wv+hey l Rmu_sc0006417.1_g000006.1 95 KGYWKISGKEHGIKARrSKAVIGMKKTLTFYQGRVPKSKKTSWVIHEYYL 144 **********98566779************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MSRDKTTPLS VPVGYRFLPT EEELVNHYLK KKIHGGNDSE INQIIPEIDL CKYEPAELPA 60 LLGTETEAHD MEWFFLTRKA YKYNKSSRSN RSTKKGYWKI SGKEHGIKAR RSKAVIGMKK 120 TLTFYQGRVP KSKKTSWVIH EYYLPGNGVI QKQAQGDFVI CRLKIRPDKK DSLVSNEGQS 180 GSPSVSEMNQ EGNVELLFHQ PQPQDCCSSA LRSPVSQELE AVLQTNNTND DCNELQSPFG 240 DSDSCHQDGN EVSTCDEYET VYDVFPQLRD PPEENLDSLF GPHQPQDYCP SIQQSPIYTK 300 LWYVPHQLQP QDYYPVILQS PIYTKLGDVP HPLQPQDYEP SKLQSPIYTK LGNVPDANLY 360 CGECNNWQSA IKKKISTDEV DIPFRQIMSN SENQATDYRV LEVRMVHHPQ IEENLESVVY 420 PFQPQDSTLQ PLMYTKFGDA LHNIECNELQ SSFGDTDSSL TKFLNTNFAY QDGFK

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MSRDKTTPLS VPVGYRFLPT EEELVNHYLK KKIHGGNDSE INQIIPEIDL CKYEPAELPA  60
LLGTETEAHD MEWFFLTRKA YKYNKSSRSN RSTKKGYWKI SGKEHGIKAR RSKAVIGMKK  120
TLTFYQGRVP KSKKTSWVIH EYYLPGNGVI QKQAQGDFVI CRLKIRPDKK DSLVSNEGQS  180
GSPSVSEMNQ EGNVELLFHQ PQPQDCCSSA LRSPVSQELE AVLQTNNTND DCNELQSPFG  240
DSDSCHQDGN EVSTCDEYET VYDVFPQLRD PPEENLDSLF GPHQPQDYCP SIQQSPIYTK  300
LWYVPHQLQP QDYYPVILQS PIYTKLGDVP HPLQPQDYEP SKLQSPIYTK LGNVPDANLY  360
CGECNNWQSA IKKKISTDEV DIPFRQIMSN SENQATDYRV LEVRMVHHPQ IEENLESVVY  420
PFQPQDSTLQ PLMYTKFGDA LHNIECNELQ SSFGDTDSSL TKFLNTNFAY QDGFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	5e-37	NAC family protein