PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006417.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 732aa MW: 83032.3 Da PI: 4.8412

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006417.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109	5.5e-34	10	161	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........................kvkaeekewyfF 61 + +rF+Pt +el++++L+kk + k+ + ++i+e+d++k+eP++Lp + ++ +wyfF Rmu_sc0006417.1_g000002.1 10 QEYRFRPTKKELLCDHLEKKNQCKDSQSMSIIPEIDLCKHEPRELPGlvftgqenlgrklffffffwftrpaESWDSQGKWYFF 93 558********************999999***********558999999999999998876532235569 PP NAM 62 skrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++rd kya+++r+nr+t +g+Wk tgk +++++ +++++g k++L+f k +pk++kt Wv+hey l Rmu_sc0006417.1_g000002.1 94 APRDYKYANSTRSNRTTGEGFWKPTGKVRDIKAPgSKAVIGRKRILTFQKHGEPKPQKTGWVIHEYYL 161 *****************************9666779************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MSCQIFPIPQ EYRFRPTKKE LLCDHLEKKN QCKDSQSMSI IPEIDLCKHE PRELPGLVFT 60 GQENLGRKLF FFFFFWFTRP AESWDSQGKW YFFAPRDYKY ANSTRSNRTT GEGFWKPTGK 120 VRDIKAPGSK AVIGRKRILT FQKHGEPKPQ KTGWVIHEYY LIEAQSDRPK QIGDFVVCCL 180 KYKSDNSDHD EDAPFCNPGS GSCSMASSVA NQAEENLASN EQFNGTDYEA ETGGGRITEA 240 EEHLAYKKLR DELRIPIGNQ NEFEGSQTDP YNLWTSVEGQ ADRSNSSHMI EERLNDPEMH 300 EQHQSPMYTT NVQNDGCRKR KYPFEDNDSS LANKKNNIST NDGDELVYNT TSNSENQAAD 360 VILEGDSVVF CLKNKSDKKD FLVSDEGEPD GTGVSNWKIH AAHKNDEPLF HQPQPLDDCC 420 SSAVRSRASL ELEAILQAIG TNDDCNKLQS PCGDSTSCLE DRNEVSTCDE DENMDGVFPQ 480 LCDPPEVNLD SFLRPLQPQD YCPSILQSPI YPKLGNVPNS DLCFSECNDW QFAFKKKIST 540 NEVDIPVRHI MSNFEHQATD SRILEVRMVH RQAKQNMESA FYPFQPQDSA LQSMMYTMHG 600 DALHNIECNE LQSYSSDQTA QTPSVDSNLL KHWEGSTIGI VEMATGQISL SSPNSNPKTR 660 GLFFFLPLLP QHFQASELHR DFGEGFKMMA SVQAAFYGSE NCVLDPTLFR EVVDYKVAEH 720 EQRRKLAAGE KI

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MSCQIFPIPQ EYRFRPTKKE LLCDHLEKKN QCKDSQSMSI IPEIDLCKHE PRELPGLVFT  60
GQENLGRKLF FFFFFWFTRP AESWDSQGKW YFFAPRDYKY ANSTRSNRTT GEGFWKPTGK  120
VRDIKAPGSK AVIGRKRILT FQKHGEPKPQ KTGWVIHEYY LIEAQSDRPK QIGDFVVCCL  180
KYKSDNSDHD EDAPFCNPGS GSCSMASSVA NQAEENLASN EQFNGTDYEA ETGGGRITEA  240
EEHLAYKKLR DELRIPIGNQ NEFEGSQTDP YNLWTSVEGQ ADRSNSSHMI EERLNDPEMH  300
EQHQSPMYTT NVQNDGCRKR KYPFEDNDSS LANKKNNIST NDGDELVYNT TSNSENQAAD  360
VILEGDSVVF CLKNKSDKKD FLVSDEGEPD GTGVSNWKIH AAHKNDEPLF HQPQPLDDCC  420
SSAVRSRASL ELEAILQAIG TNDDCNKLQS PCGDSTSCLE DRNEVSTCDE DENMDGVFPQ  480
LCDPPEVNLD SFLRPLQPQD YCPSILQSPI YPKLGNVPNS DLCFSECNDW QFAFKKKIST  540
NEVDIPVRHI MSNFEHQATD SRILEVRMVH RQAKQNMESA FYPFQPQDSA LQSMMYTMHG  600
DALHNIECNE LQSYSSDQTA QTPSVDSNLL KHWEGSTIGI VEMATGQISL SSPNSNPKTR  660
GLFFFLPLLP QHFQASELHR DFGEGFKMMA SVQAAFYGSE NCVLDPTLFR EVVDYKVAEH  720
EQRRKLAAGE KI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.3	2e-28	NAC family protein