PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006297.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 380aa MW: 43090.1 Da PI: 10.8005

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006297.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81.9	1.6e-25	178	249	2	66
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 + +kdr sk++T++g++d vRlsa++ ++f+d+qd+LG+d++ + +WL+++ak+ai+el+ + Rmu_sc0006297.1_g000003.1 178 TCRKDRYSKVCTAKGPKDHHVRLSAHTSIQFYDVQDRLGYDRPNMAADWLIKKAKAAIDELPPWnpnsisvQ 249 789**********************************************************99844444441 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
LSELTAPATS SSETSPVQFS SLLRSSLWWS LAAVLLHRGA ARWHRLRKSD PTGKRISGDV 60 KALGFHLWLR GSRLNRSMVA DGDLDVDFMI RRSLKSYVTN GDRSQMGLIL QVRKIVAEAE 120 RTHHRICKKK NGGEPQQPLP LRNDVVLLSF LIGFGDKDCF FLHRKRNREA RGHILRATCR 180 KDRYSKVCTA KGPKDHHVRL SAHTSIQFYD VQDRLGYDRP NMAADWLIKK AKAAIDELPP 240 WNPNSISVQT ISSPMVPISP PQDMQNASLH FSMVEAPSSL FANQRGAMVG SSGVAELVNQ 300 NSLNFLQVRM VWRPKLMLIF VCLQLPLIKV RLEAEVAARP VKLQVRMVWR WCCMSGMTER 360 MAGWDWSCDL RVEGWRGLSL

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

LSELTAPATS SSETSPVQFS SLLRSSLWWS LAAVLLHRGA ARWHRLRKSD PTGKRISGDV  60
KALGFHLWLR GSRLNRSMVA DGDLDVDFMI RRSLKSYVTN GDRSQMGLIL QVRKIVAEAE  120
RTHHRICKKK NGGEPQQPLP LRNDVVLLSF LIGFGDKDCF FLHRKRNREA RGHILRATCR  180
KDRYSKVCTA KGPKDHHVRL SAHTSIQFYD VQDRLGYDRP NMAADWLIKK AKAAIDELPP  240
WNPNSISVQT ISSPMVPISP PQDMQNASLH FSMVEAPSSL FANQRGAMVG SSGVAELVNQ  300
NSLNFLQVRM VWRPKLMLIF VCLQLPLIKV RLEAEVAARP VKLQVRMVWR WCCMSGMTER  360
MAGWDWSCDL RVEGWRGLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	7e-34	TCP family protein