PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0006267.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 231aa MW: 26376.3 Da PI: 10.7305 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 69.4 | 1.2e-21 | 175 | 224 | 1 | 50 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieW 50 a+g+kd+hsk++T + +RdR++Rl+a++a++f+d+ d+LG+d++sk ++W Rmu_sc0006267.1_g000006.1 175 ATGRKDSHSKVCTTKRPRDRSIRLVAHTAIQFYDMHDRLGYDQPSKVVDW 224 589*********************************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MGGGDSTSGS TKRRRRRYSR KSQSSSLSLG AVPPAFDHPP KRSAPPPKSK FVNTNIDDLP 60 DNVLVDILSQ LPSYEYVYEY SSFVCKRWRY LMSYLYYSGR YLLRHKQPPP LTLINKRGET 120 FPIKLIPSSP KFLSMLFKRL MSVMSLTCEP VVVGATASFS TASEIVEAQG HIVRATGRKD 180 SHSKVCTTKR PRDRSIRLVA HTAIQFYDMH DRLGYDQPSK VVDWPRRTRR T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 17 | KRRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 2e-27 | TCP family protein |