PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006266.1_g000052.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 660aa    MW: 72865.6 Da    PI: 5.2786
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006266.1_g000052.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4094.6e-1252756442374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 +lL +c+ea+ ++d +++++++a+l elasp+g+++ Rl+ay+teALa r++r +++++++ pp+e + +  +e+ +al+l++
  Rmu_sc0006266.1_g000052.1 275 LSLLNACVEAIGTKDIAAINHFIAKLGELASPKGSNISRLTAYYTEALALRVTRLWPHVFQISPPREFD-RGDDESGTALRLLN 357
                                689****************************************************************98.5678888999**** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                                +vsPi+kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTgvg+    sk+el+etg+rLa fA
  Rmu_sc0006266.1_g000052.1 358 QVSPIPKFLHFTSNEILLRAFEGNDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGVGE----SKQELNETGDRLAGFA 437
                                ****************************************************************....**************** PP

                       GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                                 +l++pfef++ v++rled++l++L+vk++E++aVn+++qlh++l + +  +   +++L l++s++P vv ++eqea+hn++++
  Rmu_sc0006266.1_g000052.1 438 GALNLPFEFHP-VVDRLEDVRLWMLHVKEQECVAVNCAFQLHKTLYDATGGA--LRDFLGLIRSTNPAVVLMAEQEAEHNEPRL 518
                                ***********.7*******************************96554444..589*************************** PP

                       GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                                 +r++++l+yysa+fd + ++lp +s +rikvE   ++rei+n+vaceg++r+erhe +ekWr+ +e+ G++   +++++  q 
  Rmu_sc0006266.1_g000052.1 519 EARVSNSLRYYSAIFDLIGSSLPLDSPARIKVEDT-VAREIRNIVACEGSDRVERHEGFEKWRMLMEQGGYRCNGITDREFLQS 601
                                **********************************9.9*********************************************** PP

                       GRAS 338 klllrkvksdgyrveee......sgslvlgWkdrpLvsvSaWr 374
                                + ll++++ + y+v+++       ++l+l W+d+pL++vSaW+
  Rmu_sc0006266.1_g000052.1 602 QFLLKMYECENYSVKKQghenegAAALTLSWMDQPLYTVSAWT 644
                                ********999****6655555567788**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    
MLAGCSSSTL LSPRHRLRSE AAAQLQACHF QLPSMSTQRL DLPCSFPRKD SSRSQPIRPV  60
GLSVEKSSID SKTGTRSLKQ SIRLPPLATS RPAATIQAEV KDQFWEKRGK GLKRFAEVED  120
EKEEDESCRN RAKRKRCSSE NGEGGENGLS LGELGGGNFW FQPGFHVPRS VQAITGIDPP  180
QFPYTFPNNP WLQSVVTEIT DLKEGETSHG PVGEASGNSS TSSGSQSLGL RVNESVSEPE  240
GGVGSGNGYN PYGDAGVEAE DEEESEVEHQ GFELLSLLNA CVEAIGTKDI AAINHFIAKL  300
GELASPKGSN ISRLTAYYTE ALALRVTRLW PHVFQISPPR EFDRGDDESG TALRLLNQVS  360
PIPKFLHFTS NEILLRAFEG NDRVHIIDFD IKQGLQWPSL FQSLASRTNP PSHVRITGVG  420
ESKQELNETG DRLAGFAGAL NLPFEFHPVV DRLEDVRLWM LHVKEQECVA VNCAFQLHKT  480
LYDATGGALR DFLGLIRSTN PAVVLMAEQE AEHNEPRLEA RVSNSLRYYS AIFDLIGSSL  540
PLDSPARIKV EDTVAREIRN IVACEGSDRV ERHEGFEKWR MLMEQGGYRC NGITDREFLQ  600
SQFLLKMYEC ENYSVKKQGH ENEGAAALTL SWMDQPLYTV SAWTPIDVAG GSSPSFSQPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein