PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006240.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 412aa    MW: 47123.5 Da    PI: 4.5046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006240.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.42.3e-22151492128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk..kvka.....eekewyfFskrdkkyatgkrknr 76 
                                 pG rF P ++elv +yLk+ ++g++++  +  + ++d+y + ePw++ +  k+k       +k++yfF++++k ++t+kr +r
  Rmu_sc0006240.1_g000008.1  15 LPGQRFCPMEDELVLFYLKPMLSGQNVPGRNRvVFDCDLYGHqEPWEIWEafKTKRphdlrLNKDIYFFTQHKKMSSTDKRVRR 98 
                                59************************8775544999****8879****742422224333334588****************** PP

                        NAM  77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 + sg+Wk   + k+v s  +g++vglkk  ++ +  + + ++  W++he+ l
  Rmu_sc0006240.1_g000008.1  99 NVGSGTWKGDNSGKPVRSVeTGRAVGLKKRYAYKN--EDSVHNGCWILHEFYL 149
                                ********9999999998768899********984..5555699*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MQQEFSMEES RRNHLPGQRF CPMEDELVLF YLKPMLSGQN VPGRNRVVFD CDLYGHQEPW  60
EIWEAFKTKR PHDLRLNKDI YFFTQHKKMS STDKRVRRNV GSGTWKGDNS GKPVRSVETG  120
RAVGLKKRYA YKNEDSVHNG CWILHEFYLD RSLRDKKQIV KDYVLCRLRK NGEPKTKIEK  180
KESNVKRKRE QEELLEPQAK RQRTVPSIDN APLTMPSEDD AAFAAELEES LECFEDDNAP  240
SEAHAIDFQG EENGGQQPLA EMQAGPSFGD DHGIFNMLPE EDFLWEELLK EMGIEKDEPV  300
LNGESINIDM AEEKENSTLL YAPTSSMSAA YDGCNDMPYL SSGKGCLDPS GSNNVCGGSI  360
GFQDGAYWVE SLLEVPSTVE QQKTADEDCS DWLESINFSP EENNLLWSDM QW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-16NAC family protein