PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006223.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 359aa MW: 40555.2 Da PI: 6.514

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006223.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.4	8.2e-34	3	106	26	129
NAM 26 kkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107 k+l++ +vi+evdiyk+ PwdLp k + + ++ +wyfFs+ +kkyatg r nrat++gyWk +gkd++v +ge+vg k+Lv Rmu_sc0006223.1_g000007.1 3 KRLHV-KVIAEVDIYKYAPWDLPdKsCWRFGDLKWYFFSPIEKKYATGARVNRATEAGYWKMSGKDRSVNY-NGEVVGWIKSLV 84 55666.78************96345666889*********************************9.999***** PP NAM 108 fykgrapkgektdWvmheyrle 129 fy+gr ++ge+tdWv+heyrle Rmu_sc0006223.1_g000007.1 85 FYTGRPSRGERTDWVLHEYRLE 106 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MGKRLHVKVI AEVDIYKYAP WDLPDKSCWR FGDLKWYFFS PIEKKYATGA RVNRATEAGY 60 WKMSGKDRSV NYNGEVVGWI KSLVFYTGRP SRGERTDWVL HEYRLEDKGV PQESYVLCVL 120 FQKEGQGPKN GAQYGAPFKE EDWTDDEVEI CLDTVPHANR PEPDLVLPRG YNSSSLTSTD 180 RPEGICIGPS SESCISDVVP PSCNIFRSVP SNSVTTEKQS VSANADILSM LDCFVEESTF 240 LINGNDKNKE LDNLIHSGNT STTQKLDILN SRNANATEER DNIPHSGNAN ATDHFNRSDI 300 YRDLADLGNL GRVEDGEGFL DLFGSKRRRT SFMLTDSGRA RAAAKWVHPR WRQRLCGHR

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MGKRLHVKVI AEVDIYKYAP WDLPDKSCWR FGDLKWYFFS PIEKKYATGA RVNRATEAGY  60
WKMSGKDRSV NYNGEVVGWI KSLVFYTGRP SRGERTDWVL HEYRLEDKGV PQESYVLCVL  120
FQKEGQGPKN GAQYGAPFKE EDWTDDEVEI CLDTVPHANR PEPDLVLPRG YNSSSLTSTD  180
RPEGICIGPS SESCISDVVP PSCNIFRSVP SNSVTTEKQS VSANADILSM LDCFVEESTF  240
LINGNDKNKE LDNLIHSGNT STTQKLDILN SRNANATEER DNIPHSGNAN ATDHFNRSDI  300
YRDLADLGNL GRVEDGEGFL DLFGSKRRRT SFMLTDSGRA RAAAKWVHPR WRQRLCGHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.3	1e-80	NAC family protein