PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006223.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 453aa MW: 51295.4 Da PI: 4.599

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006223.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.8	4.5e-49	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrF+Ptd elv++yLk+kv gk+l++ +v++evdiyk+ PwdLp k + ++++ +wyfF++r+kkya+g r nrat++gy Rmu_sc0006223.1_g000006.1 6 LPPGFRFNPTDVELVQYYLKRKVMGKRLPV-KVVAEVDIYKWAPWDLPdKsCWRSGDLKWYFFCPREKKYASGARMNRATDRGY 88 79**************************.99**********96446777888********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 Wk+tgkd++vl ++e+vg ktL+f++grap+g++tdWv+heyrle Rmu_sc0006223.1_g000006.1 89 WKTTGKDRSVLY-SNEVVGWIKTLIFHTGRAPRGQRTDWVLHEYRLE 134 ********.8999**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MGKSSLPPGF RFNPTDVELV QYYLKRKVMG KRLPVKVVAE VDIYKWAPWD LPDKSCWRSG 60 DLKWYFFCPR EKKYASGARM NRATDRGYWK TTGKDRSVLY SNEVVGWIKT LIFHTGRAPR 120 GQRTDWVLHE YRLEDKKLVD MGVPQDSYVL CMVFQKDGIG PRSNKQYGAP FKEEDWTDDE 180 VETDVVPHVN MSEPNLVHAN IHQPEPHLIH SNMPEPDLVQ ANIPDQVPVN SNITEPDLVY 240 GNMPDPYLVY PNMPESDLHY ANMPQSDLGY ANMSEPSLVL PSNYNSSIAT RTNSRASCVS 300 DILPPSSNVL QSVSSNYVTT EKPHVSTDDD MMSMLNCFTE EGTFSMSDID KNEQLDNLIY 360 SGDANPIADF ERHDDAHEDR GGLSKNGYNI PNGATSGAPG ENEPYLELVD LDKPLNGNNS 420 LFPMISPPHT FLGETPYEDS LFHGVMTYED WMC

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MGKSSLPPGF RFNPTDVELV QYYLKRKVMG KRLPVKVVAE VDIYKWAPWD LPDKSCWRSG  60
DLKWYFFCPR EKKYASGARM NRATDRGYWK TTGKDRSVLY SNEVVGWIKT LIFHTGRAPR  120
GQRTDWVLHE YRLEDKKLVD MGVPQDSYVL CMVFQKDGIG PRSNKQYGAP FKEEDWTDDE  180
VETDVVPHVN MSEPNLVHAN IHQPEPHLIH SNMPEPDLVQ ANIPDQVPVN SNITEPDLVY  240
GNMPDPYLVY PNMPESDLHY ANMPQSDLGY ANMSEPSLVL PSNYNSSIAT RTNSRASCVS  300
DILPPSSNVL QSVSSNYVTT EKPHVSTDDD MMSMLNCFTE EGTFSMSDID KNEQLDNLIY  360
SGDANPIADF ERHDDAHEDR GGLSKNGYNI PNGATSGAPG ENEPYLELVD LDKPLNGNNS  420
LFPMISPPHT FLGETPYEDS LFHGVMTYED WMC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.3	4e-88	NAC family protein