PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006148.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 378aa MW: 40646.8 Da PI: 9.4284

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006148.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	139	1.3e-43	80	157	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls +k y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+q+ Rmu_sc0006148.1_g000004.1 80 RCQVEGCNVDLSGVKAYYSRHKVCAMHSKTPTVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 157 6**************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MTTTDSGGSS SSPPNNSSTE ESLNGLKFGR KIYFEDSALG PNPPKSGSGS AGSSSSGATP 60 PKKQRSGGGA GLVHQGHPPR CQVEGCNVDL SGVKAYYSRH KVCAMHSKTP TVIVAGLEQR 120 FCQQCSRFHQ LPEFDQGKRS CRRRLAGHNE RRRKPQPGSM MSTRFGRLSS SIYENTSRVG 180 SFLMDFTAYP RAGRDEWATA RTCERPPGNQ TVTATGKFLQ HPWQSNPENT RSDLYLQGSA 240 GGTSYPGPGI PPGECVSGVT DSSCALSLLS NQPWDSRNRG VGTNAFINTQ GAPVAQSIAN 300 VGTINPFPTT SWGFKGNEAG SSSHQMLPDL GLGQISQPHN SHYSSELELS QQGRRQQNME 360 LGNSRGYDSS SQHMNWSL

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MTTTDSGGSS SSPPNNSSTE ESLNGLKFGR KIYFEDSALG PNPPKSGSGS AGSSSSGATP  60
PKKQRSGGGA GLVHQGHPPR CQVEGCNVDL SGVKAYYSRH KVCAMHSKTP TVIVAGLEQR  120
FCQQCSRFHQ LPEFDQGKRS CRRRLAGHNE RRRKPQPGSM MSTRFGRLSS SIYENTSRVG  180
SFLMDFTAYP RAGRDEWATA RTCERPPGNQ TVTATGKFLQ HPWQSNPENT RSDLYLQGSA  240
GGTSYPGPGI PPGECVSGVT DSSCALSLLS NQPWDSRNRG VGTNAFINTQ GAPVAQSIAN  300
VGTINPFPTT SWGFKGNEAG SSSHQMLPDL GLGQISQPHN SHYSSELELS QQGRRQQNME  360
LGNSRGYDSS SQHMNWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	9e-72	SBP family protein