PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006101.1_g000010.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 412aa MW: 46791.2 Da PI: 5.2147

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006101.1_g000010.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.4	5.4e-40	8	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......................kvkaeek.ewyf 60 +p+G+rFhP+deel+++yL++k + k+ +++++i+e+d++k+eP++Lp+ +v+ +++ +wyf Rmu_sc0006101.1_g000010.1 8 VPKGYRFHPSDEELLSHYLEQKNKCKDSQITTIIPEIDVCKHEPRELPElaftraeslgtkffsffffwfagEVSWDDQgKWYF 91 589*************************999***********6689999999999999998877554455569* PP NAM 61 FskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 F++rd ky++++r+nr+t +g+Wk tgkd+++ + +++++g k+tL+fyk pk +kt+Wv+hey l Rmu_sc0006101.1_g000010.1 92 FTPRDYKYNNSTRSNRTTGEGFWKITGKDRAINAPgSKAVIGRKRTLTFYKRGVPKFQKTSWVIHEYYL 160 ******************************9666779************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MCCGGFTVPK GYRFHPSDEE LLSHYLEQKN KCKDSQITTI IPEIDVCKHE PRELPELAFT 60 RAESLGTKFF SFFFFWFAGE VSWDDQGKWY FFTPRDYKYN NSTRSNRTTG EGFWKITGKD 120 RAINAPGSKA VIGRKRTLTF YKRGVPKFQK TSWVIHEYYL IQAHSDPPKQ KGDFVVCCLK 180 YKSDNFDHDK DAPFCDRGSS SCSMASNVVN QAQENWASKE LVNVVPIPSG NDDEAETGGG 240 MITEEEEYLT LKELRDALQI PIGNPHEFEV QGMQTDPCPI DKNDLSTTVE GQPDRSSSSD 300 MIKELLDDPE NLDSLFHPPA PPQLHNSPMY TTNVHNDECH KRTYPFEDNN PSLTKKNIIS 360 TNDDDELVSN TACSSENQAA NMIPERPPVS FWLKLRPANA YGSNAIRKST FL

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MCCGGFTVPK GYRFHPSDEE LLSHYLEQKN KCKDSQITTI IPEIDVCKHE PRELPELAFT  60
RAESLGTKFF SFFFFWFAGE VSWDDQGKWY FFTPRDYKYN NSTRSNRTTG EGFWKITGKD  120
RAINAPGSKA VIGRKRTLTF YKRGVPKFQK TSWVIHEYYL IQAHSDPPKQ KGDFVVCCLK  180
YKSDNFDHDK DAPFCDRGSS SCSMASNVVN QAQENWASKE LVNVVPIPSG NDDEAETGGG  240
MITEEEEYLT LKELRDALQI PIGNPHEFEV QGMQTDPCPI DKNDLSTTVE GQPDRSSSSD  300
MIKELLDDPE NLDSLFHPPA PPQLHNSPMY TTNVHNDECH KRTYPFEDNN PSLTKKNIIS  360
TNDDDELVSN TACSSENQAA NMIPERPPVS FWLKLRPANA YGSNAIRKST FL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66300.1	1e-35	NAC family protein