PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0005969.1_g000008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C3H | ||||||||
Protein Properties | Length: 250aa MW: 27416.1 Da PI: 7.8994 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.3 | 1.9e-11 | 52 | 76 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG C++G++C+F+H+p Rmu_sc0005969.1_g000008.1 52 EPDCSYYIRTGLCRFGATCRFNHPP 76 789********************97 PP | |||||||
2 | zf-CCCH | 39.8 | 7.4e-13 | 97 | 121 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Rmu_sc0005969.1_g000008.1 97 QPECQYYLKTGTCKFGATCKFHHPR 121 799********************96 PP | |||||||
3 | zf-CCCH | 41.2 | 2.8e-13 | 157 | 183 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Rmu_sc0005969.1_g000008.1 157 PGEPLCIFYSRYGICKFGPSCKFDHPM 183 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MDFDAGIPMS RASAAPVTDD ASSLSPQDAM WQMNLRSSES MEPGPYPERA GEPDCSYYIR 60 TGLCRFGATC RFNHPPNRKL AIATARMKGE FPERIGQPEC QYYLKTGTCK FGATCKFHHP 120 RDKAGIAGRV AMFHHPRERL IPAPDCVLSP IGLPLRPGEP LCIFYSRYGI CKFGPSCKFD 180 HPMGIFTYNL SASSSAESPA RRLLGSTSGT TSLNLSSEGL VEAGSTKPRR LSLSEPRQMP 240 SADENIDTEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-77 | C3H family protein |