PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0005949.1_g000014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 347aa MW: 38664.5 Da PI: 6.1512 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 24 | 9.9e-08 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H Rmu_sc0005949.1_g000014.1 130 HYCEICGKGFKRDANLRMHMRAH 152 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 223 | 246 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + Rmu_sc0005949.1_g000014.1 223 YSCNRCNkKSFSVVADLKSHLKHC 246 99*******************977 PP | |||||||
3 | zf-C2H2 | 13.4 | 0.00024 | 254 | 270 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrks L H+ Rmu_sc0005949.1_g000014.1 254 TCGTSFSRKSKLFGHMA 270 6**************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence |
MSFPGQSLQF PTAYYSDDPD PRVPLQNLDS VRTRMDSLQL FLTQSINNNE LISPHQMDMV 60 SAGISSAIHE IISNGAALFA CSRIPRPDPT RKPEVKKEEE NNEDDDGAVD GGDSEIVEVD 120 AVELLAEHIH YCEICGKGFK RDANLRMHMR AHGNQFKTPE ALAKPEKIAG VGGEVYTGGG 180 RNTRFSCPYV GCNRNKGHAK FRALKSVICV KNHFKRSHCP KMYSCNRCNK KSFSVVADLK 240 SHLKHCGEAR WRCTCGTSFS RKSKLFGHMA LFEGHMPAVE DDNKGAATCV VTAMEEEEED 300 GEERHRTASW KGEGSRPIYE DIDFSEELFS GLGSIEGFCL EDMFVDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 8e-71 | C2H2 family protein |