PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005891.1_g000016.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 725aa MW: 81412.1 Da PI: 4.9813

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005891.1_g000016.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.7	3.3e-51	146	272	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +pGfrFhPtdeelv +yLk+k+ +k+l+l +vi+e+d+yk++P++Lp + +k+++++w+fFs+rd++y++g r+nrat++gyW Rmu_sc0005891.1_g000016.1 146 QPGFRFHPTDEELVLYYLKRKICKKRLKL-NVIAETDVYKWDPEELPglSLLKTGDRQWFFFSPRDRRYPNGGRSNRATRHGYW 228 69*************************.99***********644788899************************ PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd+++ + ++ vglkktLvfykgrap+ge+tdWvmhey+l Rmu_sc0005891.1_g000016.1 229 KATGKDRNISC-YNRSVGLKKTLVFYKGRAPTGERTDWVMHEYTL 272 *******.8899*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MGEIAAIVGL CGVVVAAWLG SDWQQGLLRS RMSMMVRRIW GCGAATTVAW MAAAVSPSSC 60 VVEWAWAWAL FLVPTCARFL FSVFIVDYVS WAPPPHHPIT HPIHHPITHP IRKGHTIVNG 120 GLILAESVMV SGDDLASAFC DGQFWQPGFR FHPTDEELVL YYLKRKICKK RLKLNVIAET 180 DVYKWDPEEL PGLSLLKTGD RQWFFFSPRD RRYPNGGRSN RATRHGYWKA TGKDRNISCY 240 NRSVGLKKTL VFYKGRAPTG ERTDWVMHEY TLDEEELKRC QNVQEYYALY KVFKKSGPGP 300 KNGEQYGAPF REEDWADDEC PIINSSADRE ISVEQVGELA ANYNVKPFGE IPLKQVEEIT 360 ANGYVNVNSE VHSTIDDLER FMKQIADDAV LDDPQQFNDH VHTLSQVVSE EETQSTVVDL 420 YSSEVKCPQS ITTFDPSGQQ GNAHACFDFT QSATSQMQLY EASEASASDF HQPEPFTPIL 480 REEDFLEMDD LLGPQPTVSN TGNSGGNFQF DELDGFDMFH DAAMFFNDMG PIEQGTVSHQ 540 FMNSMEGNIV NQFDYQIQPA PPIQINHQLN QESTQMNNQL WAQNERQDLY TSAESKQGSG 600 PQFNSGVVYD SSNHPPQANQ NQSGNEAASV TSQFSSALWS FVESIPTTPA SASENALVSR 660 AFERMNSFSR MRIIARSANV PAGNDSETRG SRKRGFFFIP VLVALCAIFW VLMASLRQWG 720 RCISS

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MGEIAAIVGL CGVVVAAWLG SDWQQGLLRS RMSMMVRRIW GCGAATTVAW MAAAVSPSSC  60
VVEWAWAWAL FLVPTCARFL FSVFIVDYVS WAPPPHHPIT HPIHHPITHP IRKGHTIVNG  120
GLILAESVMV SGDDLASAFC DGQFWQPGFR FHPTDEELVL YYLKRKICKK RLKLNVIAET  180
DVYKWDPEEL PGLSLLKTGD RQWFFFSPRD RRYPNGGRSN RATRHGYWKA TGKDRNISCY  240
NRSVGLKKTL VFYKGRAPTG ERTDWVMHEY TLDEEELKRC QNVQEYYALY KVFKKSGPGP  300
KNGEQYGAPF REEDWADDEC PIINSSADRE ISVEQVGELA ANYNVKPFGE IPLKQVEEIT  360
ANGYVNVNSE VHSTIDDLER FMKQIADDAV LDDPQQFNDH VHTLSQVVSE EETQSTVVDL  420
YSSEVKCPQS ITTFDPSGQQ GNAHACFDFT QSATSQMQLY EASEASASDF HQPEPFTPIL  480
REEDFLEMDD LLGPQPTVSN TGNSGGNFQF DELDGFDMFH DAAMFFNDMG PIEQGTVSHQ  540
FMNSMEGNIV NQFDYQIQPA PPIQINHQLN QESTQMNNQL WAQNERQDLY TSAESKQGSG  600
PQFNSGVVYD SSNHPPQANQ NQSGNEAASV TSQFSSALWS FVESIPTTPA SASENALVSR  660
AFERMNSFSR MRIIARSANV PAGNDSETRG SRKRGFFFIP VLVALCAIFW VLMASLRQWG  720
RCISS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	173	KRKICKKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-138	NAC family protein