PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005823.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 437aa    MW: 47622.1 Da    PI: 6.0545
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005823.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.42.4e-113754343374
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                 lLl+cAe v+ ++l+ a+ lL ++sel+sp g++ +R+ ayf+ AL++r+ +s+ ++y  l++++ +  +s++ ++al++++ 
  Rmu_sc0005823.1_g000002.1  75 GLLLQCAEGVAMDNLHDASDLLPEISELSSPFGSSPERVGAYFAHALQTRVISSCLGTYTPLTTKTLTVLQSQRIFNALQAYNS 158
                                58******************************************************************999************* PP

                       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                                +sP++kfsh+taNqaI +a++ge++vH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA+
  Rmu_sc0005823.1_g000002.1 159 ISPLVKFSHFTANQAIFQALDGEDHVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----STELLESTGRRLADFAS 238
                                ***************************************************************....99*************** PP

                       GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                                +lg+pfef++l  k  +  el++L ++p Ea++V++++  h l+d ++s       +L+ +  l+Pk++++veq+++h s+sFl
  Rmu_sc0005823.1_g000002.1 239 SLGLPFEFHPLEGKIGSISELSQLGIRPSEATVVHWMH--HCLYDVTGSDLA----TLRSLSLLRPKLITIVEQDLSH-SGSFL 315
                                **********9888888889*****************9..888877777777....**********************.899** PP

                       GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                                 rf+eal+yysalfd+l  +l  +s er++vE++l+g ei+n++a  g +r+ + + +e+W e l+++GF+pv+l+ + a+qa 
  Rmu_sc0005823.1_g000002.1 316 GRFVEALHYYSALFDALGDGLTVDSLERHMVEQQLFGCEIRNILAVGGPKRTGEIK-VERWGEELKRVGFRPVSLGGNPAAQAG 398
                                **************************************************998887.9************************** PP

                       GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  Rmu_sc0005823.1_g000002.1 399 LLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 434
                                ***********************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    
MLQSLVPQSP IGANPKNPTS SSSSMKTKRA DRDDSDSAAD DPSFSNKRPS FSREPTAEPA  60
EQVAEGESAG LKLLGLLLQC AEGVAMDNLH DASDLLPEIS ELSSPFGSSP ERVGAYFAHA  120
LQTRVISSCL GTYTPLTTKT LTVLQSQRIF NALQAYNSIS PLVKFSHFTA NQAIFQALDG  180
EDHVHVIDLD IMQGLQWPGL FHILASRSKK IRSMRITGFG SSTELLESTG RRLADFASSL  240
GLPFEFHPLE GKIGSISELS QLGIRPSEAT VVHWMHHCLY DVTGSDLATL RSLSLLRPKL  300
ITIVEQDLSH SGSFLGRFVE ALHYYSALFD ALGDGLTVDS LERHMVEQQL FGCEIRNILA  360
VGGPKRTGEI KVERWGEELK RVGFRPVSLG GNPAAQAGLL LGMFPWKGYT LVEENGCLKL  420
GWKDLSLLTA SAWQPSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-180GRAS family protein