PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005811.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 466aa MW: 51679.6 Da PI: 8.8996

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005811.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00043	68	86	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cgk F ++ L H++ Rmu_sc0005811.1_g000012.1 68 CRECGKGFQSWKALIAHMK 86 9*****************7 PP
2	zf-C2H2	12.3	0.00052	293	315	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Rmu_sc0005811.1_g000012.1 293 YECGTCNKVFRSYQALGGHRASH 315 99**********99999998887 PP
3	zf-C2H2	12.6	0.00041	375	397	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H Rmu_sc0005811.1_g000012.1 375 HSCPICLKVFPTGQALGGHKRSH 397 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MRSHLIDNNS TEDQKFINSR VKVSPLSNYT ETGFETGPQA GYGLRENPKK TWRIAGSSEE 60 TSVDNKLCRE CGKGFQSWKA LIAHMKCHSN STTNSFENEQ DSWTSSKAVD SQSENETTNT 120 TRRRTTTSRR RRTRYMATTT TTSSSNFSIV NNNASSSVTE IEQEQQEEVA WCLMMLSRDV 180 GHWGGLKIVA DLDHSISDNN SGFSDAPSSL KMNRVSEIKE ATLETFKLKK LKKKMLDEEV 240 SVGGFSKSDK TKKNLILKKT ELAEAQLGSN KFNSSNKRKL QDAYDHSSKR SKYECGTCNK 300 VFRSYQALGG HRASHKKIKG CFASKIESSE HTTEFDTDLS PDHPIASDHS KLSNVIDHQD 360 DVVKVESIST KSKGHSCPIC LKVFPTGQAL GGHKRSHLIG GSADSKSSQS TIVIPKPATP 420 EVREFLDLNL PAPVEEEIST SHAAAAQAFK PWWVGTSHKP YEALVS

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MRSHLIDNNS TEDQKFINSR VKVSPLSNYT ETGFETGPQA GYGLRENPKK TWRIAGSSEE  60
TSVDNKLCRE CGKGFQSWKA LIAHMKCHSN STTNSFENEQ DSWTSSKAVD SQSENETTNT  120
TRRRTTTSRR RRTRYMATTT TTSSSNFSIV NNNASSSVTE IEQEQQEEVA WCLMMLSRDV  180
GHWGGLKIVA DLDHSISDNN SGFSDAPSSL KMNRVSEIKE ATLETFKLKK LKKKMLDEEV  240
SVGGFSKSDK TKKNLILKKT ELAEAQLGSN KFNSSNKRKL QDAYDHSSKR SKYECGTCNK  300
VFRSYQALGG HRASHKKIKG CFASKIESSE HTTEFDTDLS PDHPIASDHS KLSNVIDHQD  360
DVVKVESIST KSKGHSCPIC LKVFPTGQAL GGHKRSHLIG GSADSKSSQS TIVIPKPATP  420
EVREFLDLNL PAPVEEEIST SHAAAAQAFK PWWVGTSHKP YEALVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	1e-25	C2H2 family protein