PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005748.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 522aa MW: 58050.9 Da PI: 6.5424

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005748.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.9	9.4e-07	270	291	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Rmu_sc0005748.1_g000013.1 270 FCAICGKGFKRDANLRMHMRGH 291 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MDHKDKICAD PWAKDLRNKT CSDRPPFANF GSHQHQNKWE DPSILDYGMR IEPSFQKLSQ 60 PSEDQTSLPC NSNNEKTIAD GEDVQMNEIL HASKIQDWDP RTMLTNLSFL EQKIHQLQDL 120 VHLIVGRRGQ VQGRPDELVA QQQQLITADL TSIIAQLIST AGSLLPSVKH TLSTATSSVG 180 QFGQLGGSFV SSGAGTEAPV KLQINSGSKL SEQPNQTDLI TNYGTEQSYN IEEHESKDEE 240 DADDGENLPP GTYEILQLEK EEILAPHTHF CAICGKGFKR DANLRMHMRG HGDEYKTPAA 300 LAKPNKESSS EPTLIKRYSC PYAGCKRNKD HKKFQPLKTI LCVKNHYKRT HCDKSYTCSR 360 CNTKKFSVIA DLKTHEKHCG KDKWLCSCGT TFSRKDKLFG HIALFQGHTP AIPLDETKTT 420 VGPSEHGEGS EAPNRVGSIN FNFGSTVPSG SGIVQNIMDV KESVDDPTSY FSPLNFDTCN 480 FDGFHEFPRP PFEDSESSFS FLMPGSCNYT QKTGGESNSK KI

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MDHKDKICAD PWAKDLRNKT CSDRPPFANF GSHQHQNKWE DPSILDYGMR IEPSFQKLSQ  60
PSEDQTSLPC NSNNEKTIAD GEDVQMNEIL HASKIQDWDP RTMLTNLSFL EQKIHQLQDL  120
VHLIVGRRGQ VQGRPDELVA QQQQLITADL TSIIAQLIST AGSLLPSVKH TLSTATSSVG  180
QFGQLGGSFV SSGAGTEAPV KLQINSGSKL SEQPNQTDLI TNYGTEQSYN IEEHESKDEE  240
DADDGENLPP GTYEILQLEK EEILAPHTHF CAICGKGFKR DANLRMHMRG HGDEYKTPAA  300
LAKPNKESSS EPTLIKRYSC PYAGCKRNKD HKKFQPLKTI LCVKNHYKRT HCDKSYTCSR  360
CNTKKFSVIA DLKTHEKHCG KDKWLCSCGT TFSRKDKLFG HIALFQGHTP AIPLDETKTT  420
VGPSEHGEGS EAPNRVGSIN FNFGSTVPSG SGIVQNIMDV KESVDDPTSY FSPLNFDTCN  480
FDGFHEFPRP PFEDSESSFS FLMPGSCNYT QKTGGESNSK KI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein