PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005748.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 550aa    MW: 62213.2 Da    PI: 6.5188
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005748.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.35.7e-86964301343
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                lv+ Ll  A+av++++ + a + L++l + +s  gd++qR++ayf+ +Laarl+   s  y+ ++ ++t+    +ee+ a++++
  Rmu_sc0005748.1_g000002.1  96 LVHMLLITATAVNENNVSSALENLTELYKSVSLCGDSVQRVVAYFADGLAARLLTRKSPFYDVISKEPTH----EEEFVAFTAL 175
                                6899***************************************************9*****999998886....78889999** PP

                       GRAS  85 sevsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleet 161
                                + vsP+++f+h+taNqaI e++e+e     + +HiiDfd+s+G+QWp+L+q+L+++   ++  slRiTg+g+    s +el+et
  Rmu_sc0005748.1_g000002.1 176 YRVSPYYQFAHFTANQAIIESFEKEedknnRSLHIIDFDVSYGFQWPSLIQSLSEKGssSSRISLRITGFGR----SLDELRET 255
                                ***********************9988777789**********************99534455*********....9******* PP

                       GRAS 162 gerLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                                ++rL +f + + ++ fef+ l    l+  +l +Lr k++E++aVnlv++l +l  +++++++     Lk v  l+P +v +veq
  Rmu_sc0005748.1_g000002.1 256 ENRLLSFSKGCrNLIFEFQGL----LQGSNLINLRKKRNETIAVNLVFHLNNLN-NNMKISD----SLKSVHLLNPSIVMLVEQ 330
                                ********98648*******8....77788899*******************97.4444444....8***************** PP

                       GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpv 327
                                e ++++ sFl rf+e+l+y++a+fdsl+  lp es er ++E+  lg+ei++++   + +  r+ +++ e+W++r+e+ GF+ +
  Rmu_sc0005748.1_g000002.1 331 EGSRSARSFLPRFMESLHYFAAMFDSLDDCLPLESVERLSIEKNHLGKEIKSMLNYDHIQeDRKTEKSTETWKARMESHGFEGI 414
                                ******************************************************9998772455566789************** PP

                       GRAS 328 plsekaakqaklllrk 343
                                +ls+k   qa+lll+ 
  Rmu_sc0005748.1_g000002.1 415 NLSSKSKIQARLLLKI 430
                                *************974 PP
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    
MEDIDEEGDE LLNLSLAIVT NSGGERMKKR KRRENTGDLS ASSYEGCEGK IFRLLQMREQ  60
MLKLDHKKKG GGGDHNYCND NNIYGSVDED GKGLQLVHML LITATAVNEN NVSSALENLT  120
ELYKSVSLCG DSVQRVVAYF ADGLAARLLT RKSPFYDVIS KEPTHEEEFV AFTALYRVSP  180
YYQFAHFTAN QAIIESFEKE EDKNNRSLHI IDFDVSYGFQ WPSLIQSLSE KGSSSSRISL  240
RITGFGRSLD ELRETENRLL SFSKGCRNLI FEFQGLLQGS NLINLRKKRN ETIAVNLVFH  300
LNNLNNNMKI SDSLKSVHLL NPSIVMLVEQ EGSRSARSFL PRFMESLHYF AAMFDSLDDC  360
LPLESVERLS IEKNHLGKEI KSMLNYDHIQ EDRKTEKSTE TWKARMESHG FEGINLSSKS  420
KIQARLLLKI RTHYCPLQFE GESSNGSSTA AGFRVFERDD GRTISLGWQD SLQTLATTAT  480
YIEALNPRNP EPAAPPPELA GKIPNQPPEE AKVPLPGSHP SSPPLTTIFY HHQRLDSRFR  540
EPKKFFPELA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833KKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-51GRAS family protein