PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005699.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 283aa    MW: 32364.9 Da    PI: 5.8657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005699.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88.3e-08163206755
                                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                ++ r RR++i ++ +eL +l+P        K++ ae+L+ A +Y+k Lq
  Rmu_sc0005699.1_g000003.1 163 IAARERRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYNYVKFLQ 206
                                56799*****************95.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MALNWEVPQF FDSDMTCIQQ NLEAELVGDF LQCVNSDYSN PHNFLDPWYD PCYLLNLENP  60
DFDHLLPPFS LKPDMFPVQD FEPYPQPKRQ KCSKEYYCRD LTPTFSNGFV PNPCARPEFF  120
SGAFTTPVLY FQHPEVVDGN SRKTSVENVG KKVEERSVSP QSIAARERRR KITEKTQELG  180
KLVPGGSKMN TAEMLTAAYN YVKFLQAQMG ILEFMGSFQE MKADHTPTKE LHVVASPTIQ  240
EKLYLEHKCL VPKEFVVVLA NHFDAESKPS LSHKLNQLLK PSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-26bHLH family protein